Alternatives and similar repositories for sci-components

Users that are interested in sci-components are comparing it to the libraries listed below

• HumanCellAtlas / metadata-schema
  This repo is for the metadata schemas associated with the HCA
  ☆69Updated this week
• vitessce / vitessce
  Vitessce is a visual integration tool for exploration of spatial single-cell experiments.
  ☆237Updated last week
• chanzuckerberg / single-cell-data-portal
  The data portal supporting the submission, exploration, and management of projects and datasets to cellxgene.
  ☆86Updated this week
• single-cell-data / SOMA
  A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.
  ☆83Updated 2 weeks ago
• biowasm / biowasm
  WebAssembly modules for genomics
  ☆262Updated 2 weeks ago
• DistributedScience / Distributed-CellProfiler
  Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.
  ☆44Updated last week
• regulatory-genomics / anndata-rs
  ☆40Updated last week
• gosling-lang / gosling.js
  Grammar of Scalable Linked Interactive Nucleotide Graphics
  ☆181Updated last week
• cmap / morpheus.js
  JavaScript matrix visualization and analysis
  ☆68Updated last year
• laminlabs / nbproject
  Light-weight Jupyter notebook tracker.
  ☆35Updated 9 months ago
• single-cell-data / TileDB-SOMA
  Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.
  ☆121Updated this week
• latchbio / latch
  a python bioinformatics framework
  ☆168Updated this week
• laminlabs / bionty-base
  Access public biological ontologies.
  ☆15Updated last year
• laminlabs / readfcs
  Read fcs files.
  ☆12Updated 2 months ago
• vindelorme / PlateEditor
  Repository for PlateEditor, the web application allowing management of plate layout, results visualization and analysis
  ☆22Updated 2 months ago
• ebi-gene-expression-group / anatomogram
  Anatomogram illustrating Expression Atlas experiments
  ☆49Updated 5 years ago
• laminlabs / lamindb
  Open-source data framework for biology. Context and memory for datasets and models at scale. Query, trace & validate with a lineage-nativ…
  ☆225Updated this week
• abdenlab / oxbow
  Oxbow makes genomic data ready for high-performance analytics.
  ☆148Updated last week
• genome-spy / genome-spy
  A visualization grammar and GPU-accelerated toolkit for genomic data
  ☆188Updated this week
• vitessce / vitessce-python
  Python API and Jupyter widget for Vitessce
  ☆61Updated last week
• aws / amazon-genomics-cli
  ☆147Updated last year
• scverse / formulaic-contrasts
  Build contrasts for models defined with formulaic
  ☆12Updated last week
• scverse / annbatch
  Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse
  ☆24Updated last week
• geneontology / go-annotation
  This repository hosts the tracker for issues pertaining to GO annotations.
  ☆38Updated this week
• software-gardening / almanack
  An open-source handbook of applied guidance and tools for sustainable software development and maintenance.
  ☆23Updated this week
• SingleRust / SingleRust
  Single Rust: Pioneering single-cell analysis with Rust's concurrency for scalable, high-throughput pipelines. 🧬🚀
  ☆87Updated 2 months ago
• iskandr / bcb731
  Defense Against the Dark Arts
  ☆80Updated 2 years ago
• kanaverse / scran.js
  Single cell analysis in Javascript
  ☆22Updated 2 months ago
• scverse / shadows
  Shadow objects for AnnData and MuData (experimental)
  ☆11Updated 11 months ago
• nf-core / mcmicro
  An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.
  ☆30Updated last week