A corpus of Biomedical papers annotated with mentions of UMLS entities.
☆344Nov 9, 2021Updated 4 years ago
Alternatives and similar repositories for MedMentions
Users that are interested in MedMentions are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆114Feb 10, 2023Updated 3 years ago
- Medical Concept Annotation Tool☆528Jul 25, 2025Updated 8 months ago
- System for Medical Concept Extraction and Linking☆437Aug 12, 2024Updated last year
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆178Jul 7, 2023Updated 2 years ago
- BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).☆589Mar 25, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A full spaCy pipeline and models for scientific/biomedical documents.☆1,940Dec 4, 2025Updated 4 months ago
- Code and Data for all experiments from our ACL 2018 paper "Hierarchical Losses and New Resources for Fine-grained Entity Typing and Linki…☆42Aug 5, 2019Updated 6 years ago
- BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences☆612Aug 15, 2023Updated 2 years ago
- ☆101Feb 25, 2022Updated 4 years ago
- BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.☆297Jan 12, 2022Updated 4 years ago
- Universal Dependencies (v1.0) for the GENIA 1.0 Treebank, along with additional raw abstracts and metadata.☆23May 11, 2020Updated 5 years ago
- ☆77Dec 20, 2023Updated 2 years ago
- Named Entity Recognition for biomedical entities☆48Jan 11, 2023Updated 3 years ago
- Medical Text Mining and Information Extraction with spaCy☆437Nov 1, 2022Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆234Aug 15, 2017Updated 8 years ago
- Table compiling the list of biomedically-related corpora available for named entity recognition (and some also suitable for association d…☆18Mar 15, 2018Updated 8 years ago
- Basic Python 3 tools to interact with UMLS lexica☆123Jan 10, 2019Updated 7 years ago
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆79Jun 28, 2022Updated 3 years ago
- Python wraper for MetaMap☆173Jul 22, 2020Updated 5 years ago
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆176Apr 18, 2022Updated 4 years ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Jul 14, 2020Updated 5 years ago
- A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in bio…☆36Sep 18, 2018Updated 7 years ago
- Repository used to collect biomedical corpus on the Internet!☆35Sep 24, 2020Updated 5 years ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆96Aug 5, 2019Updated 6 years ago
- Fast and Effective Biomedical Entity Linking Using a Dual Encoder☆18Apr 21, 2022Updated 3 years ago
- Adversarial Learning of Knowledge Embeddings for the Unified Medical Language System☆39Jan 21, 2020Updated 6 years ago
- A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).☆157Mar 12, 2023Updated 3 years ago
- ECIR 2020 - MedLinker: Medical Entity Linking with Neural Representations and Dictionary Matching☆29Jun 12, 2023Updated 2 years ago
- Corpus of Online Medical EnTities: the cometA corpus☆51Mar 6, 2025Updated last year
- Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining☆2,196Aug 13, 2023Updated 2 years ago
- UMLS in Python with MongoDB.☆18Dec 7, 2018Updated 7 years ago
- Python library for work with BioCreative files☆13Mar 28, 2018Updated 8 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- BioBERT: a pre-trained biomedical language representation model for biomedical text mining☆705Jun 2, 2020Updated 5 years ago
- repository for Publicly Available Clinical BERT Embeddings☆762Aug 25, 2020Updated 5 years ago
- Retrieve and process PubTator annotations☆44Aug 10, 2023Updated 2 years ago
- Code for AMIA CRI 2016 paper "Learning Low-Dimensional Representations of Medical Concepts"☆250Aug 24, 2020Updated 5 years ago
- Weakly supervised medical named entity classification☆73Dec 23, 2022Updated 3 years ago
- Library for clinical NLP with spaCy.☆646Mar 31, 2026Updated 2 weeks ago
- Tools for curating biomedical training data for large-scale language modeling☆496Dec 9, 2024Updated last year