A corpus of Biomedical papers annotated with mentions of UMLS entities.
☆347Nov 9, 2021Updated 4 years ago
Alternatives and similar repositories for MedMentions
Users that are interested in MedMentions are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆114Feb 10, 2023Updated 3 years ago
- Medical Concept Annotation Tool☆531Jul 25, 2025Updated last year
- System for Medical Concept Extraction and Linking☆449Aug 12, 2024Updated last year
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆185Jul 7, 2023Updated 3 years ago
- BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).☆597Mar 25, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A full spaCy pipeline and models for scientific/biomedical documents.☆1,977Dec 4, 2025Updated 7 months ago
- Code and Data for all experiments from our ACL 2018 paper "Hierarchical Losses and New Resources for Fine-grained Entity Typing and Linki…☆42Aug 5, 2019Updated 6 years ago
- BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences☆616Aug 15, 2023Updated 2 years ago
- ☆101Feb 25, 2022Updated 4 years ago
- BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.☆298Jan 12, 2022Updated 4 years ago
- Universal Dependencies (v1.0) for the GENIA 1.0 Treebank, along with additional raw abstracts and metadata.☆23May 11, 2020Updated 6 years ago
- ☆81Dec 20, 2023Updated 2 years ago
- Named Entity Recognition for biomedical entities☆48Jan 11, 2023Updated 3 years ago
- Medical Text Mining and Information Extraction with spaCy☆438Nov 1, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆236Aug 15, 2017Updated 8 years ago
- Table compiling the list of biomedically-related corpora available for named entity recognition (and some also suitable for association d…☆18Mar 15, 2018Updated 8 years ago
- Basic Python 3 tools to interact with UMLS lexica☆124Jan 10, 2019Updated 7 years ago
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆80Jun 28, 2022Updated 4 years ago
- Python wraper for MetaMap☆172Jul 22, 2020Updated 6 years ago
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆177Apr 18, 2022Updated 4 years ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Jul 14, 2020Updated 6 years ago
- A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in bio…☆36Sep 18, 2018Updated 7 years ago
- Repository used to collect biomedical corpus on the Internet!☆35Sep 24, 2020Updated 5 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆97Aug 5, 2019Updated 6 years ago
- Fast and Effective Biomedical Entity Linking Using a Dual Encoder☆18Apr 21, 2022Updated 4 years ago
- Adversarial Learning of Knowledge Embeddings for the Unified Medical Language System☆39Jan 21, 2020Updated 6 years ago
- ECIR 2020 - MedLinker: Medical Entity Linking with Neural Representations and Dictionary Matching☆28Jun 12, 2023Updated 3 years ago
- Corpus of Online Medical EnTities: the cometA corpus☆52Mar 6, 2025Updated last year
- Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining☆2,200Aug 13, 2023Updated 2 years ago
- This is the open source repository of my Recursive Neural Network for the BioCreative 6 track5 - chemprot task.☆11Feb 22, 2019Updated 7 years ago
- BioBERT: a pre-trained biomedical language representation model for biomedical text mining☆706Jun 2, 2020Updated 6 years ago
- Python library for work with BioCreative files☆13Mar 28, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- repository for Publicly Available Clinical BERT Embeddings☆773Aug 25, 2020Updated 5 years ago
- Code for AMIA CRI 2016 paper "Learning Low-Dimensional Representations of Medical Concepts"☆250Aug 24, 2020Updated 5 years ago
- Weakly supervised medical named entity classification☆73Dec 23, 2022Updated 3 years ago
- Retrieve and process PubTator annotations☆44Aug 10, 2023Updated 2 years ago
- Library for clinical NLP with spaCy.☆671Jun 4, 2026Updated last month
- Tools for curating biomedical training data for large-scale language modeling☆506Dec 9, 2024Updated last year
- [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.☆232Apr 28, 2023Updated 3 years ago