sg-wbi / belb
Biomedical Entity Linking Benchmark
☆11Updated 3 months ago
Alternatives and similar repositories for belb:
Users that are interested in belb are comparing it to the libraries listed below
- Bio relation extraction labeled dataset☆44Updated 2 years ago
- MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)☆19Updated last year
- Bioformer: an efficient BERT model for biomedical text mining☆54Updated 2 years ago
- Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT☆28Updated 3 years ago
- a module to calculate the MeSH similarity☆24Updated 3 years ago
- Grounding of biomedical named entities with contextual disambiguation☆43Updated this week
- a module to calculate the MeSH similarity☆26Updated 3 years ago
- ☆32Updated last year
- Data structures and code to read/write BioC XML and Json.☆31Updated last year
- ☆66Updated 2 years ago
- EMNLP'2021: Can Language Models be Biomedical Knowledge Bases?☆56Updated 2 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Updated 4 years ago
- Repository for student projects within biomedical text mining from Lund University☆52Updated last year
- SciFive: a text-text transformer model for biomedical literature☆94Updated 9 months ago
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆45Updated 4 years ago
- [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.☆184Updated last year
- Rare disease identification from free-text clinical notes with ontologies and weak supervision☆28Updated last year
- Python library for working with BioC files☆13Updated 6 years ago
- ☆18Updated 3 years ago
- BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction☆26Updated last year
- ☆25Updated last year
- BioELECTRA☆51Updated 3 years ago
- Retrieve and process PubTator annotations☆44Updated last year
- AIONER☆52Updated 7 months ago
- ☆13Updated last month
- Named Entity Recognition for biomedical entities☆47Updated 2 years ago
- BioELMo is a biomedical version of embeddings from language model (ELMo), pre-trained on PubMed abstracts.☆33Updated 5 years ago
- BioM-Transformers: Building Large Biomedical Language Models with BERT, ALBERT and ELECTRA☆35Updated last year
- Using pretrained language models for biomedical knowledge graph completion.☆46Updated 3 years ago
- Biomedical Term Annotator☆9Updated last month