sg-wbi / belb
Biomedical Entity Linking Benchmark
☆12Updated 4 months ago
Alternatives and similar repositories for belb:
Users that are interested in belb are comparing it to the libraries listed below
- ☆25Updated last year
- Bio relation extraction labeled dataset☆45Updated 3 years ago
- Bioformer: an efficient BERT model for biomedical text mining☆54Updated 2 years ago
- ☆16Updated 2 months ago
- Grounding of biomedical named entities with contextual disambiguation☆43Updated last month
- MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)☆19Updated last year
- Biomedical Term Annotator☆9Updated 2 months ago
- ☆32Updated last year
- ☆67Updated 2 years ago
- EMNLP'2021: Can Language Models be Biomedical Knowledge Bases?☆57Updated 2 years ago
- Data structures and code to read/write BioC XML and Json.☆32Updated last year
- [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.☆187Updated 2 years ago
- AIONER☆54Updated 9 months ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆40Updated last year
- a module to calculate the MeSH similarity☆25Updated 3 years ago
- a module to calculate the MeSH similarity☆26Updated 4 years ago
- BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction☆26Updated last year
- Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT☆29Updated 3 years ago
- BioM-Transformers: Building Large Biomedical Language Models with BERT, ALBERT and ELECTRA☆37Updated last year
- Cross-domain data integration for named entity disambiguation in biomedical text☆11Updated 3 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Updated 4 years ago
- Text annotation tool for team collaboration☆41Updated last year
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆78Updated 2 years ago
- Named Entity Recognition for biomedical entities☆47Updated 2 years ago
- Repository for student projects within biomedical text mining from Lund University☆54Updated last year
- Multimodal Transformers for biomedical text and Knowledge Graph data☆34Updated 2 years ago
- Rare disease identification from free-text clinical notes with ontologies and weak supervision☆29Updated 2 years ago
- ✖️MEN - A Modular Toolkit for Cross-Lingual Medical Entity Normalization☆26Updated 4 months ago
- Build system for the RTX-KG2pre biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)☆39Updated this week
- BioELECTRA☆50Updated 3 years ago