sg-wbi / belbLinks
Biomedical Entity Linking Benchmark
☆13Updated 5 months ago
Alternatives and similar repositories for belb
Users that are interested in belb are comparing it to the libraries listed below
Sorting:
- Bio relation extraction labeled dataset☆45Updated 3 years ago
- Grounding of biomedical named entities with contextual disambiguation☆44Updated 3 weeks ago
- ☆67Updated 3 years ago
- a module to calculate the MeSH similarity☆26Updated 4 years ago
- Data structures and code to read/write BioC XML and Json.☆32Updated last year
- SciFive: a text-text transformer model for biomedical literature☆95Updated last year
- Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT☆29Updated 3 years ago
- BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction☆26Updated last year
- ☆17Updated 3 months ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆40Updated last year
- MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)☆19Updated last year
- a module to calculate the MeSH similarity☆25Updated 3 years ago
- ☆25Updated last year
- ☆25Updated last year
- EMNLP'2021: Can Language Models be Biomedical Knowledge Bases?☆57Updated 2 years ago
- Biomedical Term Annotator☆9Updated 3 months ago
- Bioformer: an efficient BERT model for biomedical text mining☆55Updated 2 years ago
- ☆18Updated 3 years ago
- Entity Linking & discovery solution. Agarwal et al., "Entity Linking via Explicit Mention-Mention Coreference Modeling", NAACL 2022.☆27Updated last year
- Cross-domain data integration for named entity disambiguation in biomedical text☆11Updated 3 years ago
- Multimodal Transformers for biomedical text and Knowledge Graph data☆34Updated 2 years ago
- ☆32Updated last year
- [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.☆190Updated 2 years ago
- Build system for the RTX-KG2pre biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)☆41Updated last month
- Text annotation tool for team collaboration☆41Updated last year
- Codes for paper: Mixture-of-Partitions: Infusing Large Biomedical Knowledge Graphs into BERT☆34Updated 3 years ago
- AIONER☆55Updated 10 months ago
- ✖️MEN - A Modular Toolkit for Cross-Lingual Medical Entity Normalization☆27Updated 5 months ago
- A Serverless Text Annotation Tool for Corpus Development☆56Updated 3 months ago
- Rare disease identification from free-text clinical notes with ontologies and weak supervision☆31Updated 2 years ago