facebookresearch / bio-lmView external linksLinks
We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.
☆163Jul 29, 2021Updated 4 years ago
Alternatives and similar repositories for bio-lm
Users that are interested in bio-lm are comparing it to the libraries listed below
Sorting:
- BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.☆296Jan 12, 2022Updated 4 years ago
- Code Synonyms Do Matter: Multiple Synonyms Matching Network for Automatic ICD Coding [ACL 2022]☆54Aug 6, 2022Updated 3 years ago
- ☆24Jun 12, 2023Updated 2 years ago
- Combining encoder-based language models☆11Nov 11, 2021Updated 4 years ago
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆155Sep 13, 2023Updated 2 years ago
- ☆38Mar 27, 2022Updated 3 years ago
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆202Mar 28, 2024Updated last year
- BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).☆588Mar 25, 2023Updated 2 years ago
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆179Jul 7, 2023Updated 2 years ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆342Nov 9, 2021Updated 4 years ago
- [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.☆213Apr 28, 2023Updated 2 years ago
- Machine reading comprehension on clinical case reports☆151Aug 28, 2025Updated 5 months ago
- EMNLP 2022: Biomedical NER for the Enterprise with Distillated BERN2 and the Kazu Framework☆11Aug 29, 2024Updated last year
- This project shows how to build a simple handwriting recognizer in Keras with the IAM dataset.☆13Aug 15, 2021Updated 4 years ago
- ☆63Jul 4, 2023Updated 2 years ago
- Pre-trained Language Model for Biomedical Question Answering☆125Mar 24, 2023Updated 2 years ago
- [ACL 2022] LinkBERT: A Knowledgeable Language Model 😎 Pretrained with Document Links☆449Apr 5, 2022Updated 3 years ago
- auto icd coding with prompt☆49May 7, 2024Updated last year
- BioELECTRA☆50Oct 27, 2021Updated 4 years ago
- Abbreviation definition dection library trained on PubMed abstracts☆51Jul 6, 2020Updated 5 years ago
- A text augmentation tool for named entity recognition.☆54Jul 22, 2021Updated 4 years ago
- Evaluate language models using multiple choice items☆13Updated this week
- This repository lists papers, codes, and datasets in Biomedical Text Summarisation based on PLM☆23Oct 4, 2022Updated 3 years ago
- Implementation of the BLUE benchmark with Transformers.☆20Feb 16, 2024Updated last year
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆114Feb 10, 2023Updated 3 years ago
- In-BoXBART: Get Instructions into Biomedical Multi-task Learning☆14Aug 23, 2022Updated 3 years ago
- Code for paper "ProgGen: Generating Named Entity Recognition Datasets Step-by-step with Self-Reflexive Large Language Models"☆17Mar 29, 2024Updated last year
- ☆101Feb 25, 2022Updated 3 years ago
- Improving Biomedical Pretrained Language Models with Knowledge [BioNLP 2021]☆65Feb 6, 2023Updated 3 years ago
- Research code for the paper "How Good is Your Tokenizer? On the Monolingual Performance of Multilingual Language Models"☆28Oct 3, 2021Updated 4 years ago
- On the Stability of Fine-tuning BERT: Misconceptions, Explanations, and Strong Baselines☆138Sep 6, 2023Updated 2 years ago
- Python library for converting between BioNLP formats☆22Apr 20, 2023Updated 2 years ago
- A publishing website of a table collecting meta-learning-related papers in the area of human language processing.☆17Aug 2, 2021Updated 4 years ago
- Leaderboards are widely used in NLP and push the field forward. While leaderboards are a straightforward ranking of NLP models, this simp…☆18Mar 30, 2022Updated 3 years ago
- Code for reproducing meta-learning for cross-lingual transfer learning in NLU and QA☆13Aug 17, 2021Updated 4 years ago
- ☆18Oct 13, 2022Updated 3 years ago
- EMNLP'22 | PromptEHR: Conditional Electronic Healthcare Records Generation with Prompt Learning☆32Jun 8, 2023Updated 2 years ago
- Named Entity Recognition for biomedical entities☆49Jan 11, 2023Updated 3 years ago
- Large medical text dataset curated for abbreviation disambiguation, designed for natural language understanding pre-training in the medic…☆282Oct 18, 2023Updated 2 years ago