AnthonyMRios / pymetamap
Python wraper for MetaMap
☆171Updated 4 years ago
Alternatives and similar repositories for pymetamap:
Users that are interested in pymetamap are comparing it to the libraries listed below
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆326Updated 3 years ago
- ☆98Updated 3 years ago
- System for Medical Concept Extraction and Linking☆401Updated 8 months ago
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆116Updated 2 years ago
- Clinical Named Entity Recognition system (CliNER) is an open-source natural language processing system for named entity recognition in cl…☆234Updated 4 years ago
- ☆122Updated 7 years ago
- Basic Python 3 tools to interact with UMLS lexica☆123Updated 6 years ago
- ☆152Updated last year
- BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.☆294Updated 3 years ago
- ☆90Updated 5 years ago
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆178Updated 3 years ago
- Adversarial Learning of Knowledge Embeddings for the Unified Medical Language System☆39Updated 5 years ago
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆45Updated 4 years ago
- Weakly supervised medical named entity classification☆73Updated 2 years ago
- Code for AMIA CRI 2016 paper "Learning Low-Dimensional Representations of Medical Concepts"☆247Updated 4 years ago
- ☆227Updated 7 years ago
- Conversion from brat-flavored standoff to CoNLL format☆51Updated 4 years ago
- MedNLI - A Natural Language Inference Dataset For The Clinical Domain☆132Updated 2 years ago
- PubMed PICO Element Detection Dataset☆56Updated 6 years ago
- Abbreviation definition dection library trained on PubMed abstracts☆47Updated 4 years ago
- Code for the emrQA question answering dataset☆148Updated 3 years ago
- ☆98Updated last year
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆164Updated last year
- ☆72Updated last year
- A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in bio…☆36Updated 6 years ago
- A near real-time named-entity recognizer☆59Updated 11 months ago
- Clinical Concept Extraction with Contextual Word Embedding☆40Updated 4 years ago
- A repository of code samples in various languages that show how to use the UMLS Terminology Services REST API☆172Updated 2 years ago
- Resourses of pre-trained word representations on clinical texts.☆12Updated 5 years ago
- ECIR 2020 - MedLinker: Medical Entity Linking with Neural Representations and Dictionary Matching☆29Updated last year