AnthonyMRios / pymetamap
Python wraper for MetaMap
☆170Updated 4 years ago
Alternatives and similar repositories for pymetamap:
Users that are interested in pymetamap are comparing it to the libraries listed below
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆322Updated 3 years ago
- System for Medical Concept Extraction and Linking☆396Updated 7 months ago
- Clinical Named Entity Recognition system (CliNER) is an open-source natural language processing system for named entity recognition in cl…☆234Updated 4 years ago
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆45Updated 4 years ago
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆116Updated 2 years ago
- ☆90Updated 5 years ago
- ☆97Updated 3 years ago
- Adversarial Learning of Knowledge Embeddings for the Unified Medical Language System☆40Updated 5 years ago
- Basic Python 3 tools to interact with UMLS lexica☆123Updated 6 years ago
- ☆121Updated 6 years ago
- MedNLI - A Natural Language Inference Dataset For The Clinical Domain☆127Updated 2 years ago
- Source code used to develop the OHDSI knowledge base of sources with information relevant for assessing assocations between drugs and hea…☆55Updated 6 years ago
- ☆148Updated last year
- Code for AMIA CRI 2016 paper "Learning Low-Dimensional Representations of Medical Concepts"☆247Updated 4 years ago
- BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.☆292Updated 3 years ago
- ☆224Updated 7 years ago
- This is a repository for annotation data for the THYME Project, a clinical natural language processing project dedicated to extracting us…☆37Updated 9 years ago
- Abbreviation definition dection library trained on PubMed abstracts☆47Updated 4 years ago
- A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).☆157Updated 2 years ago
- Code for the emrQA question answering dataset☆146Updated 3 years ago
- Conversion from brat-flavored standoff to CoNLL format☆51Updated 4 years ago
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆176Updated 2 years ago
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆163Updated last year
- Resourses of pre-trained word representations on clinical texts.☆12Updated 5 years ago
- A repository of code samples in various languages that show how to use the UMLS Terminology Services REST API☆172Updated 2 years ago
- Clinical Concept Extraction with Contextual Word Embedding☆40Updated 4 years ago
- BioBert Pytorch☆116Updated 2 years ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Updated 4 years ago
- Crowdsourced ground truth for medical relation extraction.☆69Updated 6 years ago
- Weakly supervised medical named entity classification☆72Updated 2 years ago