Medical Text Mining and Information Extraction with spaCy
☆438Nov 1, 2022Updated 3 years ago
Alternatives and similar repositories for medaCy
Users that are interested in medaCy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆223Dec 11, 2024Updated last year
- A full spaCy pipeline and models for scientific/biomedical documents.☆1,940Dec 4, 2025Updated 4 months ago
- System for Medical Concept Extraction and Linking☆437Aug 12, 2024Updated last year
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆344Nov 9, 2021Updated 4 years ago
- Clinical Named Entity Recognition system (CliNER) is an open-source natural language processing system for named entity recognition in cl…☆233Aug 14, 2020Updated 5 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Library for clinical NLP with spaCy.☆645Mar 31, 2026Updated last week
- Medical Concept Annotation Tool☆528Jul 25, 2025Updated 8 months ago
- spaCy pipeline object for negating concepts in text☆283Jun 16, 2025Updated 9 months ago
- Python library for Natural Language Preprocessing (NLPre)☆191Jul 31, 2023Updated 2 years ago
- BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).☆588Mar 25, 2023Updated 3 years ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Jul 14, 2020Updated 5 years ago
- repository for Publicly Available Clinical BERT Embeddings☆759Aug 25, 2020Updated 5 years ago
- Multitask Learning with Pretrained Transformers☆40Mar 20, 2021Updated 5 years ago
- A near real-time named-entity recognizer☆65Feb 18, 2026Updated last month
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A Python library to de-identify medical records with state-of-the-art NLP methods.☆146Nov 17, 2025Updated 4 months ago
- Code and pretrained model for paper "Learning to Summarize Radiology Findings"☆83Feb 26, 2019Updated 7 years ago
- BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences☆611Aug 15, 2023Updated 2 years ago
- Code for the old version of BioMedICUS, for the new version see the biomedicus3 repository.☆44Mar 13, 2023Updated 3 years ago
- BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.☆297Jan 12, 2022Updated 4 years ago
- EpiTator annotates epidemiological information in text documents. It is the natural language processing framework that powers GRITS and E…☆42Jun 21, 2022Updated 3 years ago
- BioGrakn Knowledge Graph☆185Jan 15, 2021Updated 5 years ago
- Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining☆2,195Aug 13, 2023Updated 2 years ago
- Clinical NER with UMLS lookup☆22Mar 20, 2020Updated 6 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- This repository contains the corpora and supplementary data, along with instructions for recreating the experiments, for our paper: "Towa…☆15Jul 26, 2019Updated 6 years ago
- High-performance tool for negation and uncertainty detection in radiology reports☆165Jul 16, 2023Updated 2 years ago
- Clinical Natural Language Processing using spaCy, scispacy, and medspacy☆101Apr 24, 2024Updated last year
- Clinical Text Summarization with Syntax-Based Negation and Semantic Concept Identification☆21Mar 3, 2020Updated 6 years ago
- NLP scripts etc for Radiology projects☆11Jul 22, 2016Updated 9 years ago
- Table compiling the list of biomedically-related corpora available for named entity recognition (and some also suitable for association d…☆18Mar 15, 2018Updated 8 years ago
- Fuzzy matching and more functionality for spaCy.☆258Jul 6, 2024Updated last year
- BioBert Pytorch☆115Dec 9, 2022Updated 3 years ago
- A JSON-based rest service to process unstructured clinical text through a smart natural language processing system.☆51Dec 16, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Python wraper for MetaMap☆173Jul 22, 2020Updated 5 years ago
- A curated list of ML|NLP resources for healthcare.☆480Mar 26, 2023Updated 3 years ago
- A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).☆157Mar 12, 2023Updated 3 years ago
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆178Jul 7, 2023Updated 2 years ago
- ☆234Aug 15, 2017Updated 8 years ago
- 🪐 End-to-end NLP workflows from prototype to production☆1,426Oct 15, 2024Updated last year
- Medical Similarity Dataset creation from SNOMED