kilicogluh / Bio-SCoRes
A smorgasbord architecture for coreference resolution in biomedical text
☆9Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for Bio-SCoRes
- Data structures and code to read/write BioC XML and Json.☆31Updated last year
- Extracting biomedical relationships from literature with Snorkel 🏊☆59Updated 3 years ago
- Public release of the DeepPhe analytic software☆30Updated last year
- Source code used to develop the OHDSI knowledge base of sources with information relevant for assessing assocations between drugs and hea…☆56Updated 6 years ago
- ☆40Updated 4 years ago
- Retrieve and process PubTator annotations☆43Updated last year
- Bio relation extraction labeled dataset☆42Updated 2 years ago
- Universal Dependencies (v1.0) for the GENIA 1.0 Treebank, along with additional raw abstracts and metadata.☆19Updated 4 years ago
- ☆70Updated 11 months ago
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆50Updated 2 years ago
- Named Entity Recognition for biomedical entities☆47Updated last year
- A near real-time named-entity recognizer☆59Updated 5 months ago
- Bio-YODIE is GATE's biomedical named entity linking pipeline.☆17Updated 5 years ago
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆46Updated 2 years ago
- SNP Extraction Tool for Human Variations☆27Updated 9 months ago
- Medical Relations and Entities Extraction☆35Updated 2 years ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆33Updated 7 months ago
- Tool that converts between BioC XML files and BioC JSON files☆16Updated 7 years ago
- This repository contains the corpora and supplementary data, along with instructions for recreating the experiments, for our paper: "Towa…☆15Updated 5 years ago
- Medical Similarity Dataset creation from SNOMED☆27Updated 2 years ago
- Abbreviation definition dection library trained on PubMed abstracts☆45Updated 4 years ago
- Table compiling the list of biomedically-related corpora available for named entity recognition (and some also suitable for association d…☆18Updated 6 years ago
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆36Updated 4 years ago
- An information extraction system for free-text eligibility criteria☆36Updated 5 years ago
- These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This…☆84Updated 2 months ago
- Grounding of biomedical named entities with contextual disambiguation☆39Updated 3 weeks ago
- Python library for working with BioC files☆13Updated 6 years ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Updated 4 years ago
- a module to calculate the MeSH similarity☆25Updated 3 years ago
- A convolutional neural network model for relation extraction.☆12Updated last year