A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in biomedical text-mining and information extraction.
☆36Sep 18, 2018Updated 7 years ago
Alternatives and similar repositories for Biomedical-Corpora
Users that are interested in Biomedical-Corpora are comparing it to the libraries listed below
Sorting:
- Named Entity Recognition for biomedical entities☆49Jan 11, 2023Updated 3 years ago
- Repository for student projects within biomedical text mining from Lund University☆57May 26, 2023Updated 2 years ago
- ☆12Aug 14, 2020Updated 5 years ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Jul 14, 2020Updated 5 years ago
- COVID-19 corpus with annotated biomedical entities.☆11Jun 2, 2021Updated 4 years ago
- This repository contains the corpora and supplementary data, along with instructions for recreating the experiments, for our paper: "Towa…☆15Jul 26, 2019Updated 6 years ago
- ☆235Aug 15, 2017Updated 8 years ago
- BioFLAIR: Pretrained Pooled Contextualized Embeddings for Biomedical Sequence Labeling Tasks☆42May 31, 2020Updated 5 years ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆344Nov 9, 2021Updated 4 years ago
- ☆28Dec 15, 2024Updated last year
- A CRF-biLSTM based Biomedical NER model in Bioinformatics 2018.☆24Jul 31, 2018Updated 7 years ago
- Abbreviation definition dection library trained on PubMed abstracts☆51Jul 6, 2020Updated 5 years ago
- Code for "Distantly Supervised Named Entity Recognition via Confidence-Based Multi-Class Positive and Unlabeled Learning" published at AC…☆23Nov 13, 2022Updated 3 years ago
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.☆18Jul 10, 2024Updated last year
- Datasets, mainly related to Entity Linking and biological corpus.☆10May 24, 2020Updated 5 years ago
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆179Jul 7, 2023Updated 2 years ago
- ☆12Mar 1, 2022Updated 4 years ago
- ☆37Nov 16, 2020Updated 5 years ago
- Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.☆12Mar 9, 2021Updated 5 years ago
- This repository contains supplementary data, and links to the model and corpora used for the paper: Transfer learning for biomedical name…☆37Mar 5, 2019Updated 7 years ago
- FOBIE dataset and code for Semi-Open Relation Extraction, applied to Biology for Computer-Aided Biomimetics.☆35Jun 14, 2020Updated 5 years ago
- 🧬 BioRelEx: Biological Relation Extraction Benchmark @ ACL BioNLP Workshop 2019☆19Jul 31, 2019Updated 6 years ago
- Turning Ontologies Plus Annotation Properties into Vectors☆35Sep 26, 2020Updated 5 years ago
- Implementation of Using Drug Descriptions and Molecular Structures for Drug-Drug Interaction Extraction from Literature☆40Mar 3, 2021Updated 5 years ago
- Dataset for the ACL 2015 paper : Learning to Explain Entity Relationships in Knowledge Graphs☆11Oct 22, 2015Updated 10 years ago
- A Unified Syntax-aware Framework for Semantic Role Labeling☆22Oct 26, 2018Updated 7 years ago
- ☆12Sep 4, 2019Updated 6 years ago
- Unsupervised domain adaptation method for relation extraction☆18Jul 16, 2018Updated 7 years ago
- Classifying Relations via Long Short-Term Memory Networks along Biomedical Ontologies☆15Feb 15, 2023Updated 3 years ago
- BiLSTM+CRF☆10Jan 15, 2019Updated 7 years ago
- Project based at the Bond University Center for Research in Evidence-Based Practice (CREBP) with the aim of drastically reducing the time…☆15Aug 28, 2017Updated 8 years ago
- Full abstract relation extraction from biological texts with bi-affine relation attention networks☆131Jan 25, 2019Updated 7 years ago
- Adversarial Learning of Knowledge Embeddings for the Unified Medical Language System☆39Jan 21, 2020Updated 6 years ago
- Relation Classification via Convolutional Deep Neural Network☆13Nov 9, 2018Updated 7 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Feb 1, 2021Updated 5 years ago
- This is the open source repository of my Recursive Neural Network for the BioCreative 6 track5 - chemprot task.☆11Feb 22, 2019Updated 7 years ago
- For icibm paper☆11Feb 23, 2017Updated 9 years ago
- Thin wrapper for the AllenNLP's implementation of supervised open information extraction☆17Nov 19, 2019Updated 6 years ago
- Remove and restore masks for layers that do not support masking☆16Jan 22, 2022Updated 4 years ago