ncbi-nlp / BLUE_BenchmarkView external linksLinks
BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.
☆296Jan 12, 2022Updated 4 years ago
Alternatives and similar repositories for BLUE_Benchmark
Users that are interested in BLUE_Benchmark are comparing it to the libraries listed below
Sorting:
- BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).☆588Mar 25, 2023Updated 2 years ago
- We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.☆163Jul 29, 2021Updated 4 years ago
- CollaboNet for Biomedical Named Entity Recognition☆48Feb 5, 2019Updated 7 years ago
- Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining☆2,186Aug 13, 2023Updated 2 years ago
- BioELMo is a biomedical version of embeddings from language model (ELMo), pre-trained on PubMed abstracts.☆32Dec 3, 2019Updated 6 years ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆342Nov 9, 2021Updated 4 years ago
- BioFLAIR: Pretrained Pooled Contextualized Embeddings for Biomedical Sequence Labeling Tasks☆42May 31, 2020Updated 5 years ago
- BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences☆611Aug 15, 2023Updated 2 years ago
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆179Jul 7, 2023Updated 2 years ago
- Cross-type Biomedical Named Entity Recognition with Deep Multi-task Learning (Bioinformatics'19)☆135Jul 25, 2024Updated last year
- ☆37Nov 16, 2020Updated 5 years ago
- ☆233Aug 15, 2017Updated 8 years ago
- repository for Publicly Available Clinical BERT Embeddings☆752Aug 25, 2020Updated 5 years ago
- BioELECTRA☆50Oct 27, 2021Updated 4 years ago
- ☆13Oct 20, 2022Updated 3 years ago
- BioBERT: a pre-trained biomedical language representation model for biomedical text mining☆706Jun 2, 2020Updated 5 years ago
- Tools for curating biomedical training data for large-scale language modeling☆489Dec 9, 2024Updated last year
- Pre-trained Language Model for Biomedical Question Answering☆125Mar 24, 2023Updated 2 years ago
- A BERT model for scientific text.☆1,668Feb 22, 2022Updated 3 years ago
- ☆43Feb 26, 2020Updated 5 years ago
- ☆10Jun 16, 2021Updated 4 years ago
- ☆17Oct 24, 2020Updated 5 years ago
- System for Medical Concept Extraction and Linking☆431Aug 12, 2024Updated last year
- Improving Biomedical Pretrained Language Models with Knowledge [BioNLP 2021]☆65Feb 6, 2023Updated 3 years ago
- A full spaCy pipeline and models for scientific/biomedical documents.☆1,921Dec 4, 2025Updated 2 months ago
- Clinical Concept Extraction with Contextual Word Embedding☆41May 27, 2020Updated 5 years ago
- ☆24May 8, 2021Updated 4 years ago
- A system for normalizing disorder mentions in biomedical data.☆19Jul 27, 2015Updated 10 years ago
- Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …☆102Jul 14, 2020Updated 5 years ago
- ☆153Nov 30, 2023Updated 2 years ago
- Bioformer: an efficient BERT model for biomedical text mining☆55Feb 7, 2023Updated 3 years ago
- EMNLP'2021: Can Language Models be Biomedical Knowledge Bases?☆57Mar 9, 2023Updated 2 years ago
- ☆38Mar 27, 2022Updated 3 years ago
- [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.☆213Apr 28, 2023Updated 2 years ago
- BioBert Pytorch☆116Dec 9, 2022Updated 3 years ago
- A CRF-biLSTM based Biomedical NER model in Bioinformatics 2018.☆24Jul 31, 2018Updated 7 years ago
- Implementation of the BLUE benchmark with Transformers.☆20Feb 16, 2024Updated last year
- COVID-19 corpus with annotated biomedical entities.☆11Jun 2, 2021Updated 4 years ago
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆155Sep 13, 2023Updated 2 years ago