kingsaint / BioMedical-EL
Fast and Effective Biomedical Entity Linking Using a Dual Encoder
☆19Updated 2 years ago
Alternatives and similar repositories for BioMedical-EL:
Users that are interested in BioMedical-EL are comparing it to the libraries listed below
- A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in bio…☆36Updated 6 years ago
- Named Entity Recognition for biomedical entities☆47Updated 2 years ago
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆116Updated 2 years ago
- For icibm paper☆11Updated 8 years ago
- Code for AttentionMeSH☆17Updated 6 years ago
- ☆90Updated 5 years ago
- Conversion from brat-flavored standoff to CoNLL format☆51Updated 4 years ago
- ☆25Updated last year
- Repository used to collect biomedical corpus on the Internet!☆34Updated 4 years ago
- BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction☆26Updated last year
- Improving Biomedical Pretrained Language Models with Knowledge [BioNLP 2021]☆65Updated 2 years ago
- BioFLAIR: Pretrained Pooled Contextualized Embeddings for Biomedical Sequence Labeling Tasks☆42Updated 4 years ago
- Crowdsourced ground truth for medical relation extraction.☆69Updated 6 years ago
- This is a repository for annotation data for the THYME Project, a clinical natural language processing project dedicated to extracting us…☆37Updated 9 years ago
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆163Updated last year
- Entity Linking & discovery solution. Agarwal et al., "Entity Linking via Explicit Mention-Mention Coreference Modeling", NAACL 2022.☆26Updated last year
- Cross-type Biomedical Named Entity Recognition with Deep Multi-task Learning (Bioinformatics'19)☆135Updated 8 months ago
- ECIR 2020 - MedLinker: Medical Entity Linking with Neural Representations and Dictionary Matching☆29Updated last year
- BioELECTRA☆51Updated 3 years ago
- Abbreviation definition dection library trained on PubMed abstracts☆47Updated 4 years ago
- ☆35Updated 4 years ago
- ☆48Updated last year
- CollaboNet for Biomedical Named Entity Recognition☆48Updated 6 years ago
- A system for normalizing disorder mentions in biomedical data.☆19Updated 9 years ago
- NCBI disease corpus - related resources☆28Updated 7 years ago
- ☆24Updated 3 years ago
- ☆72Updated last year
- A tool for taxonomy construction using Graph Neural Networks (GNN).☆27Updated 7 months ago
- Corpus of Online Medical EnTities: the cometA corpus☆50Updated last month
- Python library for converting between BioNLP formats☆21Updated last year