Fast and Effective Biomedical Entity Linking Using a Dual Encoder
☆18Apr 21, 2022Updated 4 years ago
Alternatives and similar repositories for BioMedical-EL
Users that are interested in BioMedical-EL are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆114Feb 10, 2023Updated 3 years ago
- Vectorizing knowledge bases for entity linking☆16Feb 21, 2021Updated 5 years ago
- A Keras implementation of the AAAI21 paper "a lightweight neural model for biomedical entity linking"☆54Jul 24, 2022Updated 3 years ago
- Abbreviation definition dection library trained on PubMed abstracts☆51Jul 6, 2020Updated 5 years ago
- Code and Data for all experiments from our ACL 2018 paper "Hierarchical Losses and New Resources for Fine-grained Entity Typing and Linki…☆42Aug 5, 2019Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆180Jul 7, 2023Updated 2 years ago
- Text mining cancer biomarkers for the CIVIC database☆23Dec 16, 2025Updated 4 months ago
- Generate-and-Rank Framework with Semantic Type Regularization for Biomedical Concept Normalization☆25Feb 22, 2021Updated 5 years ago
- Entity disambiguation evaluation and error analysis tool☆116Mar 19, 2023Updated 3 years ago
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆79Jun 28, 2022Updated 3 years ago
- Corpus of Online Medical EnTities: the cometA corpus☆51Mar 6, 2025Updated last year
- Improving Fine-grained Entity Typing with Entity Linking☆16Mar 17, 2020Updated 6 years ago
- Recent trends of Entity Linking, Disambiguation, and Representation.☆346Jun 26, 2021Updated 4 years ago
- NLP for evidence-based medicine. https://www.robotreviewer.net/.☆18Jan 16, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆13Jul 24, 2024Updated last year
- [CIKM 2025] LLMAEL: Large Language Models are Good Context Augmenters for Entity Linking☆18Sep 6, 2025Updated 7 months ago
- ☆26Apr 15, 2023Updated 3 years ago
- ☆70Sep 3, 2022Updated 3 years ago
- Multi-task learning of Abstractive Summarization with Entailment Generation implemented using PyTorch☆16Jun 11, 2018Updated 7 years ago
- Language Model and Text Classification for German Language using Deep Learning☆18Jun 15, 2018Updated 7 years ago
- Zero-Shot Open Entity Typing as Type-Compatible Grounding, EMNLP'18.☆43Jan 16, 2020Updated 6 years ago
- [RECOMB 2023] Official implementation of "Pisces: A combo-wise contrastive learning approach to synergistic drug combination prediction".☆14Nov 21, 2023Updated 2 years ago
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆176Apr 18, 2022Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Get annotation suggestions for the INCEpTION text annotation platform from spaCy, Sentence BERT, scikit-learn and more. Runs as a web-ser…☆48Apr 14, 2026Updated 2 weeks ago
- Entity Evaluation code☆21Nov 6, 2019Updated 6 years ago
- Mr. Injector is a GitHub repository designed to provide practical experience with Large Language Model (LLM) security vulnerabilities.☆19Updated this week
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆344Nov 9, 2021Updated 4 years ago
- Master UI for ROBOKOP☆15Mar 31, 2023Updated 3 years ago
- Expert annotated Hallmarks of Cancer Corpus☆21Sep 18, 2018Updated 7 years ago
- Named Entity Recognition for biomedical entities☆48Jan 11, 2023Updated 3 years ago
- ☆42Sep 25, 2019Updated 6 years ago
- Coreference Model Experimentation (Tensorflow and Pytorch) : Mainly Using transfer learning and Transformer Model BERT☆22Oct 15, 2019Updated 6 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- OAQA Biomedical Question Answering (BioASQ) System☆38May 16, 2017Updated 8 years ago
- An easy-to-use API for analyzing INCEpTION annotation projects.☆17Oct 17, 2023Updated 2 years ago
- ☆11Apr 24, 2018Updated 8 years ago
- A fork of https://bitbucket.org/luanyi/scierc/src☆14Oct 21, 2020Updated 5 years ago
- Code for the paper "Latent Relation Language Models" at AAAI-20.☆41Sep 22, 2025Updated 7 months ago
- ☆35Jul 17, 2019Updated 6 years ago
- Living database of randomized controlled trials (RCTs)☆23Jun 24, 2022Updated 3 years ago