kingsaint / BioMedical-ELLinks
Fast and Effective Biomedical Entity Linking Using a Dual Encoder
☆19Updated 3 years ago
Alternatives and similar repositories for BioMedical-EL
Users that are interested in BioMedical-EL are comparing it to the libraries listed below
Sorting:
- A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in bio…☆36Updated 6 years ago
- This is a repository for annotation data for the THYME Project, a clinical natural language processing project dedicated to extracting us…☆37Updated last month
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆116Updated 2 years ago
- Named Entity Recognition for biomedical entities☆47Updated 2 years ago
- Code for AttentionMeSH☆17Updated 6 years ago
- Repository used to collect biomedical corpus on the Internet!☆35Updated 4 years ago
- For icibm paper☆11Updated 8 years ago
- ☆25Updated 2 years ago
- ECIR 2020 - MedLinker: Medical Entity Linking with Neural Representations and Dictionary Matching☆29Updated 2 years ago
- ☆90Updated 5 years ago
- BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction☆26Updated last year
- Tools for working with the S800 corpus☆11Updated 4 years ago
- Crowdsourced ground truth for medical relation extraction.☆69Updated 6 years ago
- Conversion from brat-flavored standoff to CoNLL format☆52Updated 4 years ago
- BioELECTRA☆50Updated 3 years ago
- NCBI disease corpus - related resources☆29Updated 8 years ago
- BioFLAIR: Pretrained Pooled Contextualized Embeddings for Biomedical Sequence Labeling Tasks☆42Updated 5 years ago
- Relation Extraction with Semeval 2010 data, i2b2 2010 VA challenge classification data and DDI extraction data.☆19Updated 5 years ago
- Pytorch implementation of EntQA paper☆64Updated 3 years ago
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆168Updated last year
- Improving Biomedical Pretrained Language Models with Knowledge [BioNLP 2021]☆65Updated 2 years ago
- Abbreviation definition dection library trained on PubMed abstracts☆48Updated 4 years ago
- Entity Linking & discovery solution. Agarwal et al., "Entity Linking via Explicit Mention-Mention Coreference Modeling", NAACL 2022.☆27Updated last year
- BioELMo is a biomedical version of embeddings from language model (ELMo), pre-trained on PubMed abstracts.☆33Updated 5 years ago
- ☆35Updated 4 years ago
- ☆73Updated last year
- Corpus of Online Medical EnTities: the cometA corpus☆50Updated 3 months ago
- ☆10Updated 4 years ago
- Pytorch implementation of Highly Parallel Autoregressive Entity Linking with Discriminative Correction☆67Updated 3 years ago
- FOBIE dataset and code for Semi-Open Relation Extraction, applied to Biology for Computer-Aided Biomimetics.☆35Updated 5 years ago