Alternatives and similar repositories for DeepWAS

Users that are interested in DeepWAS are comparing it to the libraries listed below

• abodein / timeOmics
  Time-Course Multi-Omics data integration
  ☆26Updated last year
• sigven / oncoEnrichR
  Explore the cancer relevance of your gene list
  ☆52Updated 3 weeks ago
• astrazeneca-cgr-publications / PEACOK
  Phenome Exome Association and Correlation Of Key phenotypes
  ☆31Updated 4 years ago
• astrazeneca-cgr-publications / JARVIS
  JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes
  ☆24Updated last year
• MeaneyLab / PRSoS
  PRS-on-SPARK
  ☆18Updated 4 years ago
• LieberInstitute / recount3
  Explore and download data from the recount3 project
  ☆37Updated 3 months ago
• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆50Updated 6 years ago
• UMMS-Biocore / debrowser
  Differential Count Data Analysis Toolbox
  ☆61Updated last year
• interactivereport / xOmicsShiny
  xOmicsShiny: an R Shiny application for cross-omics data analysis and pathway mapping, Bioinformatics Advances, Volume 5, Issue 1, 2025, …
  ☆34Updated last month
• vpalombo / PANEV
  PaNeV: an R package for a pathway-based network visualization
  ☆10Updated 4 months ago
• kuanrongchan / STAGES
  ☆36Updated 10 months ago
• WGLab / CancerVar
  Clinical interpretation of somatic mutations in cancer
  ☆50Updated 10 months ago
• salbrec / seqQscorer
  ☆22Updated 3 months ago
• gagneurlab / FRASER-analysis
  Accompanying analysis code for the FRASER manuscript
  ☆26Updated 5 years ago
• csoneson / NativeRNAseqComplexTranscriptome
  Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"
  ☆19Updated 6 years ago
• astrazeneca-cgr-publications / mantis-ml-release
  mantis-ml: Stochastic semi-supervised learning to prioritise genes from high throughput genomic screens
  ☆30Updated last year
• griffithlab / genviz.org
  Genomic data interpretation and visualization Workshop
  ☆21Updated last month
• cancerdatasci / ceres
  Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens
  ☆31Updated 6 years ago
• datapplab / pathview
  pathway based data integration and visualization
  ☆43Updated 9 months ago
• schatzlab / scikit-ribo
  Accurate estimation and robust modelling of translation dynamics at codon resolution
  ☆22Updated 8 years ago
• kuijjerlab / retriever
  Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data
  ☆16Updated 3 years ago
• pachterlab / BBB
  Bioinformatics for Benched Biologists
  ☆22Updated 5 years ago
• epaull / TieDIE
  Tied Diffusion for Subnetwork Discovery (TieDIE)
  ☆37Updated 4 years ago
• bcgsc / pori
  Platform for Oncogenomic Reporting and Interpretation (PORI)
  ☆35Updated 3 weeks ago
• bhklab / PharmacoDB
  Search across publicly available datasets to find instances where a drug or cell line of interest has been profiled.
  ☆47Updated 7 years ago
• cougarlj / COMPSRA
  COMPSRA: a COMprehensive Platform for Small RNA-Seq data Analysis
  ☆17Updated 5 years ago
• pdxgx / neoepiscope
  predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data
  ☆27Updated 2 years ago
• kendomaniac / docker4seq
  Running NGS computing demanding applications, e.g reads mapping and counting, wrapped in docker containers.
  ☆26Updated 8 months ago
• collinwa / MCFA
  ☆21Updated 2 years ago
• MaayanLab / archs4
  ARCHS4 RNA-seq processing scripts and web server pages.
  ☆62Updated 5 years ago