Jianhua-Wang / GWAS-pipelineLinks
From QC to summary statistics
☆17Updated 5 years ago
Alternatives and similar repositories for GWAS-pipeline
Users that are interested in GWAS-pipeline are comparing it to the libraries listed below
Sorting:
- Cross-population fine-mapping☆40Updated last year
- Create regional association plots from GWAS or meta-analysis☆61Updated 5 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit …☆41Updated last year
- An R package for predicting HR deficiency from mutation contexts☆30Updated 9 months ago
- Convert GWAS summary statistics to VCF☆48Updated 2 years ago
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆29Updated 3 years ago
- ☆63Updated 3 years ago
- Phenome Exome Association and Correlation Of Key phenotypes☆30Updated 4 years ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- A comprehensive toolkit for mutational signature analysis☆42Updated last year
- DriverPower☆26Updated 10 months ago
- causal TWAS (cTWAS)☆47Updated last week
- A tool to plot significant regions of GWAS☆29Updated 2 years ago
- Fuji plot—a circos representation of multiple GWAS results—☆92Updated 6 months ago
- Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium☆47Updated this week
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- iread☆25Updated 4 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- ☆36Updated 6 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated last month
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 5 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- ☆34Updated 3 weeks ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆43Updated 11 months ago
- CNV analysis workflow code for the manuscript☆13Updated 5 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated 2 months ago
- ☆38Updated 4 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- Model-based tumour subclonal deconvolution using population genetics☆33Updated last week