Alternatives and similar repositories for NuSeT

Users that are interested in NuSeT are comparing it to the libraries listed below

• maweigert / neubias_academy_stardist
  ☆31Updated 4 years ago
• DIAGNijmegen / pathology-artifact-detection
  Quality control of whole-slide images through multi-class semantic segmentation of artifacts
  ☆38Updated 2 years ago
• choosehappy / QuickAnnotator
  An open-source digital pathology based rapid image annotation tool
  ☆90Updated 2 weeks ago
• navidstuv / NuClick
  Interactive Segmentation of Nucleus
  ☆66Updated 3 years ago
• overlapping-instances / MultiStar
  ☆10Updated 5 years ago
• andreped / NoCodeSeg
  🔬 Code-free deep segmentation for computational pathology
  ☆56Updated last year
• m4ln / stainTransfer_CycleGAN_pytorch
  Image-to-Image Translation in PyTorch
  ☆24Updated 2 years ago
• choosehappy / QuPathGeoJSONImportExport
  Coincides with blogpost for using geojson and shapely
  ☆33Updated 5 years ago
• nadeemlab / ImPartial
  Interactive deep learning whole-cell segmentation and thresholding using partial annotations
  ☆41Updated 3 weeks ago
• simongraham / hovernet_inference
  HoVer-Net inference code for simultaneous nuclear segmentation and classification
  ☆72Updated 3 years ago
• BiaPyX / BiaPy
  Open source Python library for building bioimage analysis pipelines
  ☆188Updated this week
• sebastianffx / stainlib
  Python 3 library for the augmentation & normalization of H&E images
  ☆64Updated 3 years ago
• constantinpape / torch-em
  Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
  ☆114Updated last week
• smujiang / Re-stained_WSIs_Registration
  Re-stained whole slide image alignment
  ☆36Updated 2 years ago
• SBU-BMI / wsinfer
  🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
  ☆84Updated last year
• kreshuklab / plant-seg
  A tool for cell instance aware segmentation in densely packed 3D volumetric images
  ☆124Updated this week
• Bayer-Group / paquo
  PAthological QUpath Obsession - QuPath and Python conversations
  ☆130Updated 4 months ago
• MaryamHaghighat / PathProfiler
  Pipeline for computational pathology
  ☆37Updated 2 years ago
• DIAGNijmegen / pathology-whole-slide-data
  A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
  ☆108Updated 2 months ago
• AICAN-Research / FAST-Pathology
  ⚡ Open-source software for deep learning-based digital pathology
  ☆141Updated last year
• vanvalenlab / cellSAM
  Codebase for "A Foundation Model for Cell Segmentation"
  ☆169Updated 2 months ago
• haranrk / DigiPathAI
  Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay
  ☆76Updated last year
• stardist / augmend
  simple package for augmentation of n-dimensional arrays
  ☆34Updated 2 years ago
• HistoCleanQUB / HistoClean
  HistoClean is a tool for the preprocessing and augmentation of images used in deep learning models. This easy to use application brings…
  ☆32Updated 3 years ago
• AntonotnaWang / 3DCellSeg
  Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…
  ☆22Updated 2 years ago
• juglab / EmbedSeg
  Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images
  ☆127Updated last year
• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆84Updated last year
• SHIDCenter / PathoNet
  ☆36Updated 2 years ago
• DIAGNijmegen / pathology-streaming-pipeline
  Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.
  ☆78Updated 3 years ago
• Pathomation / pma_python
  Python wrapper library for PMA.start, a universal viewier for whole slide imaging and microscopy
  ☆33Updated last year