oist / UsiigaciLinks
Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning
☆203Updated 5 years ago
Alternatives and similar repositories for Usiigaci
Users that are interested in Usiigaci are comparing it to the libraries listed below
Sorting:
- The U-Net Segmentation plugin for Fiji (ImageJ)☆90Updated 3 years ago
- U-net based segmentation of nuclei in microscopy images☆52Updated 7 years ago
- Open source Python library for building bioimage analysis pipelines☆187Updated 2 weeks ago
- NuSeT: A Deep Learning Tool for Reliably Separating and Analyzing Crowded Cells☆20Updated 5 years ago
- Evaluation of Deep Learning Strategies for Nucleus Segmentation in Fluorescence Images☆14Updated 6 years ago
- PyTorch implementation of several neural network models for cellular image segmentation☆48Updated 6 years ago
- Three dimensional cross-modal image inference☆161Updated 2 months ago
- ☆204Updated 2 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆126Updated last year
- nucleus/cell and histopathology image classification,detection,segmentation☆262Updated 5 years ago
- This project focuses on tracking cancer cell based on Fuhua et al. [1], which used watershed algorithm to segment cells and built a featu…☆39Updated 6 years ago
- Deep Learning Library for Single Cell Analysis☆472Updated last year
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆123Updated 2 weeks ago
- ☆31Updated 4 years ago
- Track cells and build cell lineages☆35Updated last year
- ☆122Updated 8 years ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Updated 5 years ago
- Cloud-based data annotation tools for biological images☆83Updated last year
- ☆62Updated 7 years ago
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆32Updated 2 years ago
- AnnotatorJ: ImageJ plugin for object annotation in 2D☆25Updated 5 months ago
- A Convolutional Neural Network for Segmenting and Counting Cells in Microscopy Images☆59Updated 6 years ago
- A python algorithm for tracking cells in 3D deforming organs☆65Updated last month
- GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data☆237Updated 10 months ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆189Updated last week
- Jupyter notebooks for deep lineage analysis of single-cell heterogeneity and cell cycling duration heritability.☆30Updated 5 years ago
- Omnipose: a high-precision solution for morphology-independent cell segmentation☆132Updated 3 weeks ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆69Updated last year
- Deep Learning for EM Connectomics☆16Updated 3 years ago