feldman4 / OpticalPooledScreens_2019Links
Examples and code for optical pooled screens
☆10Updated 3 years ago
Alternatives and similar repositories for OpticalPooledScreens_2019
Users that are interested in OpticalPooledScreens_2019 are comparing it to the libraries listed below
Sorting:
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆50Updated 4 years ago
- Identification of spatial homogeneous regions☆21Updated 4 months ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- An R package for performing cell typing in SMI and other single cell data☆48Updated 8 months ago
- ☆29Updated last year
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆57Updated last year
- ☆62Updated 8 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆86Updated 2 months ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆149Updated last month
- Repository for storing prototype functionality implementations for the BKP☆43Updated last week
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆66Updated 7 months ago
- ☆24Updated 2 weeks ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆65Updated this week
- Image Mass Cytometry analysis pipeline☆26Updated 8 months ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆34Updated last month
- Tools for analyzing Slide-seq data☆31Updated 2 years ago
- ☆19Updated 5 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Updated 7 months ago
- ☆22Updated last month
- Package for the analysis of Transcripts outside segmented cells in ST data☆26Updated this week
- The Self-Assembling-Manifold (SAM) algorithm.☆46Updated last month
- ☆15Updated 3 years ago
- Code for preparing and running the imageCCA method.☆20Updated 8 years ago
- ☆41Updated 2 weeks ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆52Updated last year
- Tools to handle IMC data☆24Updated 3 years ago
- Single cell RNA-seq analysis for transcriptomic type characterization☆38Updated 4 months ago
- ☆53Updated 3 weeks ago
- ☆59Updated last month
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation☆52Updated 3 years ago