brainglobe / morphapi
A lightweight python package to download neuronal morphologies
☆17Updated this week
Related projects ⓘ
Alternatives and complementary repositories for morphapi
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Updated 3 years ago
- Code for recreating the figures in the brainrender paper (Claudi et al. 2020)☆12Updated 3 years ago
- Visualisation and exploration of brain atlases☆9Updated 4 years ago
- Automated 3D brain registration in napari with support for multiple species and atlases.☆15Updated 10 months ago
- Loading and saving of image data.☆10Updated 9 months ago
- Re-usable GitHub Action scripts☆10Updated this week
- Visualise brainreg registration output☆10Updated 2 years ago
- ☆10Updated last year
- Fancier logging with python.☆12Updated this week
- Read and write files from the BrainGlobe neuroanatomy suite☆13Updated this week
- Rendering anatomical heatmaps with brainrender and matplotlib☆34Updated this week
- Pose estimation scripts to be run on the SWC HPC cluster☆12Updated 11 months ago
- Segmentation of anatomical structures in a common coordinate space☆28Updated this week
- A tool to streamline extracellular electrophysiology analysis using SpikeInterface☆13Updated this week
- Registration to BrainGlobe atlases in napari using Elastix☆13Updated this week
- Lightweight data specification for systems neuroscience, inspired by BIDS.☆17Updated last month
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆20Updated this week
- Tools for machine learning of animal behavior☆13Updated 8 months ago
- Napari plugin for working with video files.☆13Updated 3 weeks ago
- Standalone utilities for SLEAP pose tracking data.☆13Updated this week
- General information, resources and dicussions for the BrainGlobe project.☆10Updated 11 months ago
- Brainways☆14Updated this week
- NWB extension to store pose estimation data☆13Updated last month
- Utility to create a basic Python project structure with tests, CI etc.☆23Updated this week
- SLEAP to Anipose triangulation pipeline for 3D multi-animal pose tracking.☆17Updated 3 weeks ago
- DLC2Action is an action segmentation package that makes running and tracking of machine learning experiments easy.☆24Updated 7 months ago
- Tool for the creation, validation and transfer of neuroscience project folders.☆15Updated this week
- Standalone cellfinder cell detection algorithm☆19Updated 10 months ago
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆63Updated this week
- Python tools for analysing body movements across space and time☆104Updated this week