neuroinformatics-unit / movementLinks
A Python toolbox for analysing animal body movements across space and time
☆193Updated last week
Alternatives and similar repositories for movement
Users that are interested in movement are comparing it to the libraries listed below
Sorting:
- Mix-and-match computer vision tools for your animal behaviour analysis☆18Updated 3 weeks ago
- Utility to create a basic Python project structure with tests, CI etc.☆32Updated 3 weeks ago
- A package to manage electrophysiology analysis.☆23Updated this week
- Rendering anatomical heatmaps with brainrender and matplotlib☆44Updated this week
- Lightweight data specification for systems neuroscience, inspired by BIDS.☆19Updated 3 weeks ago
- Closed-loop behavioral experiment toolkit using pose estimation of body parts.☆60Updated 2 years ago
- Analyze neuroscience data in the cloud☆18Updated 11 months ago
- A Python interface to access neuroanatomical atlases☆158Updated this week
- Browser-based NWB visualization and DANDI exploration☆59Updated last week
- Variational Animal Motion Embedding - A tool for time series embedding and clustering☆32Updated this week
- Re-usable GitHub Action scripts☆10Updated last month
- A gui for browsing joint calcium imaging + behavioral data.☆53Updated 7 months ago
- Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF☆103Updated this week
- miniscope analysis pipeline with interactive visualizations☆95Updated last year
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆62Updated this week
- A modular package to control stimulation and track behaviour☆46Updated 9 months ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆151Updated last week
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆22Updated this week
- A Python API for working with Neurodata stored in the NWB Format☆199Updated last week
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆69Updated 3 months ago
- Napari plugin for working with video files.☆13Updated 2 weeks ago
- ☆52Updated last year
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated 10 months ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated last year
- Pose estimation scripts to be run on the SWC HPC cluster☆12Updated last year
- NIU website on common software problems and their troubleshooting☆10Updated last month
- ☆10Updated 2 years ago
- Multichannel time series lossless compression in pure Python based on NumPy and zlib☆40Updated 5 months ago
- Tool for the creation, validation and transfer of neuroscience project folders.☆26Updated this week
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆174Updated last month