Automated and reproducible analysis of multiphoton imaging datasets
☆22Jul 3, 2026Updated 2 weeks ago
Alternatives and similar repositories for photon-mosaic-pipeline
Users that are interested in photon-mosaic-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Derotate images acquired via multiphoton calcium imaging☆17Jul 6, 2026Updated 2 weeks ago
- Build unbiased anatomical templates from individual images☆13Jul 14, 2026Updated last week
- Lightweight data specification for systems neuroscience, inspired by BIDS.☆23Jul 14, 2026Updated last week
- ☆11Oct 21, 2025Updated 9 months ago
- Re-usable GitHub Action scripts☆14Jul 2, 2026Updated 2 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- NIU website on common software problems and their troubleshooting☆10Jul 14, 2026Updated last week
- General information, resources and dicussions for the BrainGlobe project.☆11Feb 21, 2025Updated last year
- Pose estimation scripts to be run on the SWC HPC cluster☆12Dec 5, 2023Updated 2 years ago
- A package to manage electrophysiology analysis.☆23Jul 13, 2026Updated last week
- brainglobe.info website☆14Updated this week
- Visualise brainreg registration output☆10Nov 20, 2021Updated 4 years ago
- Fancier logging with python.☆16Jul 6, 2026Updated 2 weeks ago
- Loading and saving of image data.☆10Feb 9, 2024Updated 2 years ago
- ☆10Mar 15, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Nov 26, 2020Updated 5 years ago
- Anatomical space conventions made easy.☆12Jul 14, 2026Updated last week
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆24Jul 14, 2026Updated last week
- Utility to create a basic Python project structure with tests, CI etc.☆39Updated this week
- A Python package to download neuronal morphologies☆17Jul 14, 2026Updated last week
- Segmentation of anatomical structures in a common coordinate space☆36Jul 14, 2026Updated last week
- Registration to BrainGlobe atlases in napari using Elastix☆30Updated this week
- Automated 3D brain registration in napari with support for multiple species and atlases.☆16Jan 5, 2024Updated 2 years ago
- Read and write files from the BrainGlobe neuroanatomy suite☆15Jul 14, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Code for recreating the figures in the brainrender paper (Claudi et al. 2020)☆12Dec 11, 2020Updated 5 years ago
- Tool for the creation, validation and transfer of neuroscience project folders.☆36Jul 13, 2026Updated last week
- Standalone cellfinder cell detection algorithm☆20Jan 3, 2024Updated 2 years ago
- A repository for our participation in Google Summer of Code☆13Apr 15, 2025Updated last year
- Mix-and-match computer vision tools for your animal behaviour analysis☆29Jul 6, 2026Updated 2 weeks ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆51Jul 14, 2026Updated last week
- An R toolbox for analysing movement across space and time☆11Jun 29, 2026Updated 3 weeks ago
- Efficient cell detection in large images using cellfinder in napari☆22Jan 5, 2024Updated 2 years ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆39Nov 24, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Automated 3D brain registration with support for multiple species and atlases.☆149Jul 14, 2026Updated last week
- Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by Spi…☆18Updated this week
- Python Neural Analysis Visualization☆18Updated this week
- A GUI for running popular spike sorting algorithms on extracellular data of any file format.☆15Jun 27, 2021Updated 5 years ago
- A Python toolbox for analysing animal body movements across space and time☆287Updated this week
- A Python interface to access neuroanatomical atlases☆182Updated this week
- ☆45Jul 5, 2026Updated 2 weeks ago