Alternatives and similar repositories for CustOmics

Users that are interested in CustOmics are comparing it to the libraries listed below

• ruiyi-zhang / scPretrain
  scPretrain: Multi-task self-supervised learning for cell type classification
  ☆23Updated 3 years ago
• LincolnSteinLab / MMDRP
  Drug Response Prediction and Biomarker Discovery Using Multi-Modal Deep Learning
  ☆14Updated last year
• chenzRG / Cancer-Multi-Omics-Benchmark
  ☆49Updated 2 months ago
• BoevaLab / CancerFoundation
  CancerFoundation: A single-cell RNA sequencing foundation model to decipher drug resistance in cancer
  ☆22Updated this week
• marakeby / pnet_prostate_paper
  P-NET, Biologically informed deep neural network for prostate cancer classification and discovery
  ☆158Updated 3 years ago
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆53Updated 3 years ago
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆50Updated last month
• lanagarmire / DeepProg
  Deep-Learning framework for multi-omic and survival data integration
  ☆84Updated last year
• xiaoyeye / GCNG
  using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions
  ☆56Updated 4 years ago
• micrisor / NAT-ML
  ☆33Updated 4 years ago
• gevaertlab / sequoia-pub
  SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention
  ☆43Updated 3 months ago
• TencentAILabHealthcare / MLA-GNN
  ☆43Updated 9 months ago
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆95Updated 5 months ago
• gevaertlab / RNA-GAN
  Synthetic whole-slide imaging tile generation with gene expression profiles infused deep generative models - Cell Reports Methods
  ☆16Updated 2 years ago
• microsoft / zero-shot-scfoundation
  ☆72Updated last year
• carpenter-singh-lab / 2023_Arevalo_NatComm_BatchCorrection
  Evaluating batch correction methods for image-based cell profiling
  ☆14Updated last month
• fsct135 / DCAP
  DCAP:Integrating multi-omics data with deep learning for predicting cancer prognosis
  ☆21Updated 4 years ago
• instadeepai / multiomics-open-research
  BulkRNABert and MOJO
  ☆29Updated 2 months ago
• ArcInstitute / cell-load
  pytorch dataloaders for single-cell perturbation data
  ☆26Updated last week
• Lifoof / MoGCN
  Multi-omics integration method using AE and GCN
  ☆36Updated 2 years ago
• ratschlab / DeepSpot
  DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images
  ☆53Updated 2 weeks ago
• welch-lab / PerturbNet
  PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation
  ☆46Updated 2 months ago
• suinleelab / contrastiveVI
  ☆56Updated last year
• DabinJeong / GOAT_multi-omics_biomarker
  Multi-omics biomarker discovery tool exploiting a gene-gene interaction network
  ☆16Updated last year
• jingcheng-du / Gene2vec
  Gene2Vec: Distributed Representation of Genes Based on Co-Expression
  ☆123Updated 3 years ago
• aaronwtr / PertEval
  Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
  ☆27Updated last month
• TencentAILabHealthcare / scPROTEIN
  ☆53Updated 9 months ago
• kpcoleman / miso
  ☆28Updated 8 months ago
• lab-conrad / resVAE
  resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially usin…
  ☆12Updated 2 years ago
• theislab / CellFlow
  Modeling complex perturbations with CellFlow
  ☆85Updated this week