☆12Aug 20, 2025Updated last year
Alternatives and similar repositories for DAIRYdb
Users that are interested in DAIRYdb are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples☆20Nov 23, 2024Updated last year
- Mycobacterium tuberculosis complex lineage typing☆11Jun 22, 2025Updated last year
- Annotate your metagenome assemblies☆11Jul 19, 2018Updated 8 years ago
- Hypervariable region primer-based extractor for 16S rRNA and other SSU/LSU sequences.☆10Jul 23, 2026Updated 3 months ago
- A utility to generate input files for taxonomy assignment in QIIME from the NCBI database☆11Sep 7, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Snakemake template for building reusable and scalable machine learning pipelines with mikropml☆13Feb 26, 2025Updated last year
- de novo variant calling in trio using Nanopore long-reads☆15Aug 11, 2025Updated last year
- a simple tool for listing conda environments with descriptions☆16Mar 28, 2025Updated last year
- ☆14Jul 12, 2022Updated 4 years ago
- WhatsGNU: a tool for identifying proteomic novelty☆15Oct 23, 2026Updated 2 weeks ago
- Short-read assembler for bacterial genomics based on a de Bruijn graph written in Rust 🦅☆16Oct 20, 2026Updated 2 weeks ago
- a re-packaging of the sankey plot function for kraken reports taken from pavian and sankeyD3 from Florian Breitwieser☆15Dec 5, 2025Updated 11 months ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆31Nov 23, 2022Updated 3 years ago
- Contains the code and workflow for the bacterial strain definition paper with Kostas Kostantinidis☆14Dec 4, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package for fetching and parsing data of the Human Microbiome Compendium☆17May 6, 2026Updated 6 months ago
- BioMAJ☆14Sep 13, 2024Updated 2 years ago
- CAVA (Clinical Annotation of VAriants)☆14Sep 28, 2018Updated 8 years ago
- Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake☆49Mar 6, 2024Updated 2 years ago
- The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacteria…☆50Apr 24, 2024Updated 2 years ago
- Unofficial collection of templates and themes in line with INRAE's design system☆52Nov 15, 2024Updated last year
- Meta-Storms 2 is the standalone implementation of the Microbiome Search Engine (MSE; http://mse.ac.cn). This is the official software re…☆10Mar 14, 2020Updated 6 years ago
- orthology assignment using phylogenetic and network analyses☆58Oct 1, 2026Updated last month
- An R Package for Integrated Analysis and Visualization of Microbiome Data☆19Updated this week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆27Mar 31, 2026Updated 7 months ago
- NGS QC Toolkit: a toolkit for quality check and filtering of next generation sequencing data of Roche and Illumina technology (http://www…☆17Mar 19, 2021Updated 5 years ago
- ☆15Nov 7, 2014Updated 12 years ago
- Generate statistics from FASTQ and FASTA files. Also manipulate sequences such as renaming/sorting contigs and converting FASTQ to FASTA.…☆16Jul 14, 2026Updated 3 months ago
- A repository of notes, code, slides, and resources for the MetaPathways tutorial being held February 2014 at UBC.☆18Mar 9, 2015Updated 11 years ago
- Calculate the normalizing factors for zeroinflated sequencing data such as microbiome sequencing data☆16Jan 31, 2025Updated last year
- A set of R functions that help faciliate a lot of tedious processing☆19Aug 31, 2018Updated 8 years ago
- A manually curated database of human gut metabolic modules.☆19Oct 26, 2026Updated last week
- fast sequence evolution simulation for SARS-CoV-2 and similar☆24Apr 11, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆21Updated this week
- ☆29Oct 30, 2026Updated last week
- Neural networks for microbe-metabolite interaction analysis☆132Nov 4, 2022Updated 4 years ago
- ☆29May 22, 2025Updated last year
- A canonical correlation analysis based method for discovering (quantitative) trait-specific heterogeneous regulatory networks.☆32May 8, 2026Updated 5 months ago
- Metagenomics calibration R package☆21Feb 15, 2022Updated 4 years ago
- A package for simulating RNA-seq library preparation with parameter estimation☆23Mar 3, 2014Updated 12 years ago