ruoqi-liu / LP-SDA
Code and Datasets for paper "Towards early detection of adverse drug reactions: combining pre-clinical drug structures and post-market safety reports"
☆11Updated 3 years ago
Alternatives and similar repositories for LP-SDA:
Users that are interested in LP-SDA are comparing it to the libraries listed below
- Approaching Clinical NER as a MRC problem☆11Updated last year
- Learning from Discharge Summaries to extract mentioned diagnoses using Hierarchical Attention Model☆34Updated 7 years ago
- Estimate similarity of medical concepts based on Unified Medical Language System (UMLS)☆16Updated 3 years ago
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆31Updated 11 months ago
- Here I show how to use Deep Learning for biological and biomedical Data Integration.☆11Updated 4 years ago
- Clinical NLP workshop for ODSC☆39Updated 5 years ago
- Library and CLI for randomly generating medical data like you might get out of an Electronic Health Records (EHR) system☆31Updated 2 months ago
- Medical Relations and Entities Extraction☆36Updated 2 years ago
- Here we will post recitation materials.☆9Updated 5 years ago
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆50Updated 3 years ago
- MedXN is a medication normalization system built upon Apache UIMA framework.☆23Updated last year
- a Python tool to extract and structure numeric lab test comparison statements from text☆22Updated last year
- Clinical NLP Analysis with Elasticsearch and Kibana☆35Updated 6 years ago
- Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…☆29Updated 7 years ago
- UMLS Graph database for semantic queries☆20Updated 2 years ago
- Analysis of the human symptoms–disease network☆21Updated 8 years ago
- ☆13Updated 2 years ago
- AMIA submission examining note-derived vector representations☆10Updated 2 years ago
- Quantifying biases in BERT embeddings pretrained on MIMIC-III clinical notes☆24Updated 4 years ago
- Maps symptom and disease terms to MeSH IDs☆19Updated 9 years ago
- ☆22Updated 2 years ago
- An Attentive Neural Sequence Labeling Model for Adverse Drug Reactions Mentions Extraction☆17Updated 5 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆80Updated last week
- Machine learning on electronic health records☆11Updated 7 years ago
- A repository of all code and resources of my published blog articles.☆24Updated 2 weeks ago
- ☆29Updated 3 years ago
- pharmpy is an umbrella library for searching the FDA NDC directory, Established Pharmacologic Class (EPC), Anatomical Therapeutic Chemica…☆16Updated 4 years ago
- An R package for evaluating phenotype algorithms.☆17Updated 6 months ago
- Perform Latent Dirichlet Allocation on scientific articles with Gensim☆15Updated 5 years ago
- ☆30Updated 7 years ago