ruoqi-liu / LP-SDALinks
Code and Datasets for paper "Towards early detection of adverse drug reactions: combining pre-clinical drug structures and post-market safety reports"
☆11Updated 4 years ago
Alternatives and similar repositories for LP-SDA
Users that are interested in LP-SDA are comparing it to the libraries listed below
Sorting:
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆49Updated 3 years ago
- Learning from Discharge Summaries to extract mentioned diagnoses using Hierarchical Attention Model☆34Updated 7 years ago
- Medical Relations and Entities Extraction☆37Updated 3 years ago
- Health knowledge graph for 157 diseases and 491 symptoms, learned from >270,000 patients' data☆102Updated 4 years ago
- Using PubMed to find out how a gene contributes to addiction.☆21Updated 2 years ago
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆32Updated last year
- An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…☆44Updated last year
- Clinical NLP workshop for ODSC☆39Updated 5 years ago
- Estimate similarity of medical concepts based on Unified Medical Language System (UMLS)☆16Updated 3 years ago
- ☆23Updated 2 years ago
- Here I show how to use Deep Learning for biological and biomedical Data Integration.☆11Updated 4 years ago
- A convolutional neural network model for relation extraction.☆12Updated 2 years ago
- Approaching Clinical NER as a MRC problem☆11Updated last year
- Library and CLI for randomly generating medical data like you might get out of an Electronic Health Records (EHR) system☆32Updated 3 weeks ago
- a Python tool to extract and structure numeric lab test comparison statements from text☆22Updated 2 years ago
- Miscellaneous tools for clinical ML☆29Updated 7 years ago
- ☆55Updated 5 years ago
- Repository for the paper describing MIMIC-III☆83Updated 9 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆85Updated 2 weeks ago
- Natural Language to SQL Queries in the OMOP CDM Datasets☆11Updated 2 years ago
- Extract annotated misspellings from MIMIC-III.☆13Updated 4 years ago
- An information extraction system for free-text eligibility criteria☆38Updated 6 years ago
- Predicting adverse drug reactions from a knowledge graph☆28Updated 4 years ago
- ☆13Updated 9 years ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- Predict hospital readmission with discharge summaries☆67Updated 7 years ago
- This repository contains machine learning related work for the corpus to graph project, including Jupyter research notebooks and a Flask …☆46Updated 8 years ago
- An Attentive Neural Sequence Labeling Model for Adverse Drug Reactions Mentions Extraction☆16Updated 5 years ago
- An R package for evaluating phenotype algorithms.☆19Updated last week
- ☆29Updated 7 years ago