ruoqi-liu / LP-SDALinks
Code and Datasets for paper "Towards early detection of adverse drug reactions: combining pre-clinical drug structures and post-market safety reports"
☆11Updated 4 years ago
Alternatives and similar repositories for LP-SDA
Users that are interested in LP-SDA are comparing it to the libraries listed below
Sorting:
- Here we will post recitation materials.☆9Updated 5 years ago
- Learning from Discharge Summaries to extract mentioned diagnoses using Hierarchical Attention Model☆34Updated 7 years ago
- Clinical NLP workshop for ODSC☆39Updated 5 years ago
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆50Updated 3 years ago
- a Python tool to extract and structure numeric lab test comparison statements from text☆22Updated last year
- Embedding Complexity In the Data Representation Instead of In the Model (arXiv:1802.04233)☆24Updated 7 years ago
- Medical Relations and Entities Extraction☆37Updated 3 years ago
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆31Updated last year
- Here I show how to use Deep Learning for biological and biomedical Data Integration.☆11Updated 4 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆81Updated this week
- Estimate similarity of medical concepts based on Unified Medical Language System (UMLS)☆16Updated 3 years ago
- Approaching Clinical NER as a MRC problem☆11Updated last year
- Automatic classification of medical patient discharge notes into standard disease labels, using deep learning models☆30Updated 6 years ago
- Extract annotated misspellings from MIMIC-III.☆13Updated 4 years ago
- Health knowledge graph for 157 diseases and 491 symptoms, learned from >270,000 patients' data☆102Updated 4 years ago
- ☆13Updated 9 years ago
- A short tutorial to map biomedical free-text into UMLS concepts using MetaMap☆28Updated last year
- Perform Latent Dirichlet Allocation on scientific articles with Gensim☆15Updated 6 years ago
- AMIA submission examining note-derived vector representations☆10Updated 2 years ago
- ☆23Updated 2 years ago
- Clinical NLP Analysis with Elasticsearch and Kibana☆35Updated 6 years ago
- An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…☆43Updated last year
- Repository for the paper describing MIMIC-III☆81Updated 9 years ago
- Miscellaneous tools for clinical ML☆29Updated 7 years ago
- Weak supervision methods for extracting real world evidence from EHRs☆34Updated 5 years ago
- An information extraction system for free-text eligibility criteria☆37Updated 6 years ago
- pharmpy is an umbrella library for searching the FDA NDC directory, Established Pharmacologic Class (EPC), Anatomical Therapeutic Chemica…☆16Updated 4 years ago
- Library and CLI for randomly generating medical data like you might get out of an Electronic Health Records (EHR) system☆32Updated last week
- TigerLily: Finding drug interactions in silico with the Graph.☆99Updated 2 years ago
- ☆55Updated 5 years ago