matchms / ms2deepscoreLinks
Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity
☆71Updated 3 weeks ago
Alternatives and similar repositories for ms2deepscore
Users that are interested in ms2deepscore are comparing it to the libraries listed below
Sorting:
- Encoding MS/MS spectra using formula transformers for inferring molecular properties☆71Updated last year
- ☆33Updated last year
- ☆22Updated 3 months ago
- ☆29Updated last year
- ☆72Updated last year
- This repository contains training data for retention time prediction for the identification of metabolites from non-targeted LC-MS based …☆58Updated 3 weeks ago
- Untargeted metabolomics workflow for data processing and analysis written in Jupyter notebooks (Python)☆24Updated last year
- ☆27Updated 3 weeks ago
- A python client for the ClassyFire API☆17Updated 5 years ago
- A Python implementation of Baffling Recursive Algorithm for Isotopic distributioN calculations☆23Updated 7 months ago
- Meet FIORA! An in silico fragmentation algorithm designed to predict tandem mass spectra (MS/MS) with high accuracy. Using graph neural n…☆46Updated 2 months ago
- a python package for molecular formula analysis in MS-based small molecule studies☆32Updated 5 months ago
- TidyMS: Tools for working with MS data in untargeted metabolomics☆59Updated last year
- SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository…☆130Updated last month
- Word2Vec based similarity measure of mass spectrometry data.☆77Updated last month
- MassSpecGym: A benchmark for the discovery and identification of molecules (NeurIPS 2024 Spotlight)☆106Updated last month
- pqsar2cpd is a deep learning algorithm for translation of activity profiles into novel molecules.☆30Updated 2 years ago
- pyPept: a python library to generate atomistic 2D and 3D representations of peptides☆85Updated last month
- Protwis is the backbone of the GPCRdb. The GPCRdb contains reference data, interactive visualisation and experiment design tools for G pr…☆43Updated 2 weeks ago
- Bioinformatics and Cheminformatics protocols for peptide analysis☆44Updated 3 years ago
- Bottom-up MS/MS interrogation & Experiment-specific global annotation☆30Updated last year
- Predicting tandem mass spectra from molecules☆123Updated 3 weeks ago
- Predicting molecular fingerprint from electron−ionization mass spectrum with deep neural networks☆36Updated last year
- ☆36Updated 2 weeks ago
- ☆23Updated 9 months ago
- Base image providing dependencies for ASKCOS Docker images☆12Updated last year
- 🤖 MetaboT 🍵 is an AI system that accelerates mass spectrometry-based metabolomics data mining.☆24Updated 3 months ago
- Improve the accuracy of database search by using BERT to embed MS/MS reasonably☆19Updated last year
- Set of useful HADDOCK utility scripts☆56Updated 3 months ago
- a *biosynformatic* fingerprint to explore natural product distance and diversity☆20Updated 4 months ago