matchms / ms2deepscore
Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity
☆56Updated this week
Related projects ⓘ
Alternatives and complementary repositories for ms2deepscore
- ☆31Updated last year
- ☆22Updated 9 months ago
- ☆14Updated 6 months ago
- Fiora is an in silico fragmentation algorithm for small compounds that produces simulated tandem mass spectra (MS/MS). The framework empl…☆24Updated this week
- Encoding MS/MS spectra using formula transformers for inferring molecular properties☆48Updated 5 months ago
- SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository…☆88Updated 3 weeks ago
- A python client for the ClassyFire API☆15Updated 4 years ago
- Predicting tandem mass spectra from molecules☆72Updated 10 months ago
- a python package for molecular formula analysis in MS-based small molecule studies☆21Updated 3 weeks ago
- ☆59Updated 3 months ago
- This repository contains training data for retention time prediction for the identification of metabolites from non-targeted LC-MS based …☆38Updated this week
- Bottom-up MS/MS interrogation & Experiment-specific global annotation☆29Updated 2 months ago
- TidyMS: Tools for working with MS data in untargeted metabolomics☆53Updated 4 months ago
- ☆19Updated last month
- Untargeted metabolomics workflow for data processing and analysis written in Jupyter notebooks (Python)☆18Updated last week
- Bioinformatics and Cheminformatics protocols for peptide analysis☆35Updated last year
- Word2Vec based similarity measure of mass spectrometry data.☆62Updated 3 months ago
- A small library to provide peak picking for software processing mass spectrometry data☆20Updated 2 months ago
- ☆22Updated last year
- Efficiently predicting high resolution mass spectra with graph neural networks☆24Updated last year
- Predicting molecular fingerprint from electron−ionization mass spectrum with deep neural networks☆34Updated 8 months ago
- A Python implementation of Baffling Recursive Algorithm for Isotopic distributioN calculations☆19Updated 5 months ago
- Metabolome Annotation Workflow☆25Updated 8 months ago
- MS2Query - machine learning assisted library querying of MS/MS spectra☆39Updated 2 months ago
- Direct-to-SVG small molecule drawer.☆23Updated 3 months ago
- ☆32Updated 5 months ago
- The Mass Spec Query Language (MassQL) is a domain specific language meant to be a succinct way to express a query in a mass spectrometry …☆38Updated 4 months ago
- DreaMS (Deep Representations Empowering the Annotation of Mass Spectra)☆21Updated last month
- ☆16Updated 2 years ago
- pqsar2cpd is a deep learning algorithm for translation of activity profiles into novel molecules.☆30Updated last year