matchms / ms2deepscore
Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity
☆60Updated 3 weeks ago
Alternatives and similar repositories for ms2deepscore:
Users that are interested in ms2deepscore are comparing it to the libraries listed below
- ☆17Updated 10 months ago
- Meet FIORA! An in silico fragmentation algorithm designed to predict tandem mass spectra (MS/MS) with high accuracy. Using graph neural n…☆29Updated this week
- This repository contains training data for retention time prediction for the identification of metabolites from non-targeted LC-MS based …☆42Updated this week
- ☆24Updated last year
- Encoding MS/MS spectra using formula transformers for inferring molecular properties☆53Updated 9 months ago
- A python client for the ClassyFire API☆16Updated 4 years ago
- ☆32Updated 3 months ago
- ☆62Updated 7 months ago
- Bottom-up MS/MS interrogation & Experiment-specific global annotation☆28Updated 3 months ago
- SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository…☆101Updated 2 months ago
- TidyMS: Tools for working with MS data in untargeted metabolomics☆55Updated 8 months ago
- MS2Query - machine learning assisted library querying of MS/MS spectra☆44Updated 6 months ago
- ☆32Updated 3 weeks ago
- A small library to provide peak picking for software processing mass spectrometry data☆21Updated 3 months ago
- DreaMS (Deep Representations Empowering the Annotation of Mass Spectra)☆29Updated this week
- Improve the accuracy of database search by using BERT to embed MS/MS reasonably☆15Updated 5 months ago
- A Python implementation of Baffling Recursive Algorithm for Isotopic distributioN calculations☆20Updated 2 months ago
- ☆21Updated 5 months ago
- a python package for molecular formula analysis in MS-based small molecule studies☆25Updated last month
- Predicting tandem mass spectra from molecules☆88Updated last year
- a *biosynformatic* fingerprint to explore natural product distance and diversity☆18Updated last month
- Predicting molecular fingerprint from electron−ionization mass spectrum with deep neural networks☆36Updated last year
- A known-to-unknown metabolite identification workflow☆20Updated 4 years ago
- [Bioinformatics] 3DMolMS: prediction of tandem mass spectra from 3D molecular conformations☆21Updated last week
- Metabolome Annotation Workflow☆25Updated last year
- Efficiently predicting high resolution mass spectra with graph neural networks☆26Updated last year
- This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network☆29Updated last year
- Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.☆27Updated 2 weeks ago
- deep learning based prediction of structures and functional groups from MS/MS spectra☆10Updated last month
- ☆16Updated 2 years ago