Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity
☆76Feb 25, 2026Updated 3 weeks ago
Alternatives and similar repositories for ms2deepscore
Users that are interested in ms2deepscore are comparing it to the libraries listed below
Sorting:
- Word2Vec based similarity measure of mass spectrometry data.☆79Nov 10, 2025Updated 4 months ago
- A known-to-unknown metabolite identification workflow☆21Sep 15, 2020Updated 5 years ago
- Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.☆250Updated this week
- eMetabolomics project: Mass Annotation based on in silico Generated Metabolites☆16Oct 30, 2022Updated 3 years ago
- ☆22Mar 12, 2026Updated last week
- ☆22Sep 18, 2025Updated 6 months ago
- GLEAMS is a Learned Embedding for Annotating Mass Spectra.☆26Aug 16, 2023Updated 2 years ago
- Predicting MS1 precursor chemical formula from MS/MS data☆24Sep 20, 2023Updated 2 years ago
- SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository…☆141Nov 7, 2025Updated 4 months ago
- AI for Chemical Spectra☆16Dec 24, 2025Updated 2 months ago
- ☆16Jul 20, 2022Updated 3 years ago
- ☆72Aug 21, 2024Updated last year
- Predicting tandem mass spectra from molecules☆135Feb 10, 2026Updated last month
- Python package for efficient mass spectrometry data processing and visualization☆164Mar 5, 2026Updated 2 weeks ago
- Implementation of the SGNN graph neural network for 1H and 13C NMR prediction and a tool for distinguishing different molecules based on …☆17Sep 29, 2023Updated 2 years ago
- MS2Query - machine learning assisted library querying of MS/MS spectra☆56Nov 6, 2025Updated 4 months ago
- ☆12Jan 16, 2025Updated last year
- Metabolomics software for database-assisted deconvolution of MS/MS spectra☆19Jan 24, 2024Updated 2 years ago
- Official repository of open data MassBank records, with released versions also available from https://doi.org/10.5281/zenodo.3378723☆110Updated this week
- Tandem Mass Spectrum Prediction with Graph Transformers☆99Aug 26, 2024Updated last year
- The Mass Spec Query Language (MassQL) is a domain specific language meant to be a succinct way to express a query in a mass spectrometry …☆56Updated this week
- Ms2 basEd saMple vectOrization (memo) package☆17Jun 13, 2023Updated 2 years ago
- Defined MRM transitions from untargeted metabolomics data☆11Nov 13, 2023Updated 2 years ago
- [Bioinformatics] 3DMolMS: prediction of tandem mass spectra from 3D molecular conformations☆23Oct 13, 2025Updated 5 months ago
- asari, metabolomics data preprocessing☆60Updated this week
- Analysis and benchmarking of mass spectra similarity measures using gnps data set.☆24Aug 13, 2021Updated 4 years ago
- Search spectral library with entropy similarity☆21Apr 21, 2025Updated 11 months ago
- Improve the accuracy of database search by using BERT to embed MS/MS reasonably☆20Oct 15, 2024Updated last year
- Flash entropy search☆16Sep 24, 2023Updated 2 years ago
- Mass Spectrometry for Small Molecules using Deep Learning☆134Jun 30, 2021Updated 4 years ago
- MSDK source code repository☆40Sep 22, 2022Updated 3 years ago
- A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery☆51Aug 28, 2023Updated 2 years ago
- a python package for molecular formula analysis in MS-based small molecule studies☆33Jan 28, 2026Updated last month
- Self-supervised learning of molecular representations from millions of tandem mass spectra using DreaMS (Nat Biotechnology)☆166Mar 4, 2026Updated 2 weeks ago
- Meet FIORA! An in silico fragmentation algorithm designed to predict tandem mass spectra (MS/MS) with high accuracy. Using graph neural n…☆47Feb 23, 2026Updated 3 weeks ago
- ☆29Jun 23, 2023Updated 2 years ago
- ☆11Nov 30, 2024Updated last year
- ☆28Nov 30, 2023Updated 2 years ago
- ☆29Feb 9, 2024Updated 2 years ago