Philipbear / msbuddy
a python package for molecular formula analysis in MS-based small molecule studies
☆27Updated 2 months ago
Alternatives and similar repositories for msbuddy:
Users that are interested in msbuddy are comparing it to the libraries listed below
- MS2Query - machine learning assisted library querying of MS/MS spectra☆44Updated 7 months ago
- Bottom-up MS/MS interrogation & Experiment-specific global annotation☆28Updated 4 months ago
- Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity☆60Updated 2 months ago
- Molecular formula discovery via bottom-up MS/MS interrogation☆13Updated 8 months ago
- ☆16Updated 2 years ago
- a *biosynformatic* fingerprint to explore natural product distance and diversity☆18Updated 3 weeks ago
- ☆25Updated last year
- deep learning based prediction of structures and functional groups from MS/MS spectra☆12Updated 3 months ago
- TidyMS: Tools for working with MS data in untargeted metabolomics☆55Updated 9 months ago
- This repository contains training data for retention time prediction for the identification of metabolites from non-targeted LC-MS based …☆45Updated last month
- FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks☆36Updated 2 months ago
- ☆18Updated 11 months ago
- Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.☆28Updated last month
- Encoding MS/MS spectra using formula transformers for inferring molecular properties☆55Updated 11 months ago
- The Mass Spec Query Language (MassQL) is a domain specific language meant to be a succinct way to express a query in a mass spectrometry …☆39Updated 4 months ago
- Improve the accuracy of database search by using BERT to embed MS/MS reasonably☆16Updated 6 months ago
- A Python implementation of Baffling Recursive Algorithm for Isotopic distributioN calculations☆21Updated 3 months ago
- ☆23Updated last month
- ☆31Updated 4 months ago
- A python client for the ClassyFire API☆16Updated 4 years ago
- ☆13Updated last year
- Spectral entropy for mass spectrometry data.☆27Updated 2 months ago
- Meet FIORA! An in silico fragmentation algorithm designed to predict tandem mass spectra (MS/MS) with high accuracy. Using graph neural n…☆31Updated last week
- Untargeted metabolomics workflow for data processing and analysis written in Jupyter notebooks (Python)☆19Updated 5 months ago
- SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository…☆104Updated 3 months ago
- Python pipeline for metabolomics data preprocessing, QC, standardization and annotation☆14Updated 5 months ago
- ☆23Updated 7 months ago
- ☆63Updated 8 months ago
- Metabolome Annotation Workflow☆25Updated last year
- ☆20Updated last year