saezlab / lipyd

Related projects ⓘ

Alternatives and complementary repositories for lipyd

• jessegmeyerlab / proteomics-tutorial
  ☆54Updated 6 months ago
• ProteomicsML / ProteomicsML
  Community-curated tutorials and datasets for ML in proteomics
  ☆47Updated 5 months ago
• wfondrie / mokapot
  Fast and flexible semi-supervised learning for peptide detection in Python
  ☆43Updated 2 months ago
• bittremieux / GLEAMS
  GLEAMS is a Learned Embedding for Annotating Mass Spectra.
  ☆22Updated last year
• Roestlab / massdash
  MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization
  ☆19Updated last week
• compomics / psm_utils
  Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
  ☆25Updated this week
• computational-metabolomics / dimspy
  Python package for processing direct-infusion mass spectrometry-based metabolomics and lipidomics data
  ☆19Updated last year
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆30Updated 6 months ago
• MannLabs / alphapeptstats
  Python Package for the downstream analysis of mass-spectrometry-based proteomics data
  ☆60Updated this week
• MannLabs / alphaviz
  AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquir…
  ☆30Updated 6 months ago
• bigbio / quantms
  Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…
  ☆34Updated last week
• compomics / DeepLC
  DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
  ☆56Updated 3 weeks ago
• mobiusklein / glypy
  Glycan Analysis and Glycoinformatics Library for Python
  ☆31Updated 2 months ago
• mwang87 / MassQueryLanguage
  The Mass Spec Query Language (MassQL) is a domain specific language meant to be a succinct way to express a query in a mass spectrometry …
  ☆38Updated 4 months ago
• HUPO-PSI / mzQC
  Reporting and exchange format for mass spectrometry quality control data
  ☆28Updated this week
• mfitzp / padua
  Proteomic Data Analysis with Python (pandas, scikit-learn, numpy, scipy)
  ☆23Updated last year
• bihealth / NeatMS
  NeatMS is an open source python package for untargeted LCMS signal labelling and filtering.
  ☆28Updated 3 years ago
• ccdmb / BioDendro
  A package to cluster and visualise MS/MS spectral data
  ☆11Updated 3 years ago
• bigbio / proteomics-sample-metadata
  The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
  ☆78Updated last month
• evocellnet / funscoR
  R package for functionally scoring phosphorylation sites
  ☆19Updated 5 years ago
• Roestlab / PythonProteomics
  A collection of available Python tools for Proteomics analysis
  ☆48Updated 5 years ago
• denisbeslic / denovopipeline
  Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
  ☆34Updated 8 months ago
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆27Updated 10 months ago
• eMetaboHUB / MS-CleanR
  ☆25Updated 11 months ago
• MannLabs / alphamap
  An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
  ☆76Updated 2 weeks ago
• lifs-tools / awesome-lipidomics
  A collection of awesome lipidomics tools and resources
  ☆11Updated 2 years ago
• compomics / ms2pip
  MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
  ☆38Updated this week
• gtluu / timsconvert
  ☆32Updated last month
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆45Updated last week
• chembl / tractability_pipeline_v2
  Pipeline for assessing the tractability of potential targets (starting from Gene IDs)
  ☆20Updated 4 months ago