fermo-metabolomics / FERMOLinks
Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.
☆32Updated last month
Alternatives and similar repositories for FERMO
Users that are interested in FERMO are comparing it to the libraries listed below
Sorting:
- ☆20Updated 2 years ago
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆30Updated 11 months ago
- Python package for processing direct-infusion mass spectrometry-based metabolomics and lipidomics data☆21Updated 2 years ago
- ☆11Updated last year
- Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".☆30Updated 2 years ago
- MS2Query - machine learning assisted library querying of MS/MS spectra☆53Updated last month
- The Mass Spec Query Language (MassQL) is a domain specific language meant to be a succinct way to express a query in a mass spectrometry …☆55Updated last week
- A package to cluster and visualise MS/MS spectral data☆11Updated 4 years ago
- A python framework for microbial natural products data mining by integrating genomics and metabolomics data☆22Updated last month
- Realtime quality control for mass spectrometry data acquisition☆21Updated last month
- Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry da…☆29Updated 3 years ago
- ☆14Updated 2 years ago
- Using MASST or fastMASST, adding metadata onto a tree ontology for microbes☆21Updated 3 weeks ago
- Ms2 basEd saMple vectOrization (memo) package☆17Updated 2 years ago
- Untargeted metabolomics workflow for data processing and analysis written in Jupyter notebooks (Python)☆24Updated last year
- Metabolome Annotation Workflow☆26Updated last month
- Python pipeline for metabolomics data preprocessing, QC, standardization and annotation☆16Updated 2 weeks ago
- Molecular formula discovery via bottom-up MS/MS interrogation☆14Updated last year
- A workflow for metabolite identification and accurate profiling in multidimensional LC-IM-MS-DIA measurements. DOI: 10.5281/zenodo.☆16Updated 2 years ago
- GLEAMS is a Learned Embedding for Annotating Mass Spectra.☆26Updated 2 years ago
- Metabolic In silico Network Expansion (MINE) Database Construction and DB Logic☆20Updated last year
- BEAMSpy - Birmingham mEtabolite Annotation for Mass Spectrometry (Python Package)☆18Updated 2 years ago
- Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.☆33Updated 2 months ago
- FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks☆42Updated 5 months ago
- ☆15Updated 3 years ago
- This repository contains teaching material for the 3rd International Summer School on Non-Targeted Metabolomics Data Mining for Biomedica…☆12Updated 2 years ago
- ☆14Updated last month
- ☆26Updated 2 years ago
- NeatMS is an open source python package for untargeted LCMS signal labelling and filtering.☆33Updated 4 years ago
- A set of metabolomics tools for use in Galaxy☆11Updated 3 years ago