Alternatives and similar repositories for FERMO

Users that are interested in FERMO are comparing it to the libraries listed below

• biosustain / snakemake_UmetaFlow
  Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake
  ☆27Updated 8 months ago
• madeleineernst / pyMolNetEnhancer
  ☆21Updated 2 years ago
• computational-metabolomics / dimspy
  Python package for processing direct-infusion mass spectrometry-based metabolomics and lipidomics data
  ☆20Updated 2 years ago
• iomega / ms2query
  MS2Query - machine learning assisted library querying of MS/MS spectra
  ☆47Updated 3 months ago
• biocore / q2-qemistree
  Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".
  ☆30Updated 2 years ago
• ccdmb / BioDendro
  A package to cluster and visualise MS/MS spectral data
  ☆11Updated 4 years ago
• computational-chemical-biology / ChemWalker
  ☆11Updated last year
• mwang87 / MassQueryLanguage
  The Mass Spec Query Language (MassQL) is a domain specific language meant to be a succinct way to express a query in a mass spectrometry …
  ☆55Updated last month
• ablab / npdtools
  Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry da…
  ☆28Updated 3 years ago
• mandelbrot-project / memo
  Ms2 basEd saMple vectOrization (memo) package
  ☆17Updated 2 years ago
• NPLinker / nplinker
  A python framework for microbial natural products data mining by integrating genomics and metabolomics data
  ☆21Updated 2 weeks ago
• czbiohub-sf / Rapid-QC-MS
  Realtime quality control for mass spectrometry data acquisition
  ☆19Updated 10 months ago
• zmahnoor14 / MAW
  Metabolome Annotation Workflow
  ☆25Updated last year
• tiagolbiotech / NPOmix_python
  ☆14Updated 2 years ago
• eMetaboHUB / MS-CleanR
  ☆25Updated last year
• robinschmid / microbe_masst
  Using MASST or fastMASST, adding metadata onto a tree ontology for microbes
  ☆21Updated 2 weeks ago
• Philipbear / BUDDY_Metabolomics
  Molecular formula discovery via bottom-up MS/MS interrogation
  ☆14Updated last year
• Functional-Metabolomics-Lab / FBMN-STATS
  FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks
  ☆39Updated 2 months ago
• biosustain / pyOpenMS_UmetaFlow
  Untargeted metabolomics workflow for data processing and analysis written in Jupyter notebooks (Python)
  ☆22Updated 10 months ago
• CCMS-UCSD / GNPS_Workflows
  Public Workflows at GNPS
  ☆63Updated last year
• bittremieux-lab / falcon
  Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.
  ☆33Updated last month
• wfondrie / ppx
  A Python interface to proteomics data repositories
  ☆35Updated 3 months ago
• xia-lab / OptiLCMS
  R package for optimized LC-MS spectra processing
  ☆25Updated last month
• computational-metabolomics / beamspy
  BEAMSpy - Birmingham mEtabolite Annotation for Mass Spectrometry (Python Package)
  ☆18Updated 2 years ago
• zamboni-lab / SLAW
  Scalable and self-optimizing processing workflow for untargeted LC-MS
  ☆28Updated last year
• Gscorreia89 / chemometrics-tutorials
  ☆15Updated 2 years ago
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆28Updated last year
• secimTools / SECIMTools
  A set of metabolomics tools for use in Galaxy
  ☆11Updated 3 years ago
• shuzhao-li / mummichog
  pathway and network analysis for metabolomics
  ☆42Updated last year
• EMSL-Computing / PeakDecoder
  A workflow for metabolite identification and accurate profiling in multidimensional LC-IM-MS-DIA measurements. DOI: 10.5281/zenodo.
  ☆16Updated 2 years ago