biosustain / croissanceLinks
Tool for estimating growth rates from microbial growth curves
☆31Updated 4 years ago
Alternatives and similar repositories for croissance
Users that are interested in croissance are comparing it to the libraries listed below
Sorting:
- cameo - computer aided metabolic engineering & optimization☆120Updated 2 years ago
- Enzyme-constrained genome-scale models in python☆28Updated 2 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- Pandas DataFrames for phylogenetics☆74Updated 4 years ago
- ReFramed: metabolic modeling package☆61Updated last month
- A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.☆35Updated 2 years ago
- D3.js based visualizations of cobrapy metabolic models☆47Updated 5 years ago
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆46Updated last month
- Metabolic Engineering Workbench☆40Updated last year
- framed: a metabolic modeling package for python☆26Updated 5 years ago
- Codon usage tables in code-friendly format + Python bindings☆39Updated 5 months ago
- DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing☆32Updated 8 years ago
- ☆22Updated 5 years ago
- Python library to simulate evolutionary sequence data☆80Updated 3 years ago
- A python implementation of flux balance analysis to model microbial metabolism☆28Updated 2 years ago
- Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…☆205Updated last week
- nucleic acid folding☆104Updated 2 months ago
- Python package to study microbial communities using metabolic modeling.☆112Updated 3 weeks ago
- PyCogent: Official repository for software and unit tests☆91Updated 4 years ago
- A python wrapper for the benchling api☆50Updated 5 years ago
- Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.☆61Updated 5 years ago
- Fishers Exact Test for Python (Cython)☆66Updated 7 months ago
- Nanopore Plasmid Sequencing☆34Updated 2 years ago
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆112Updated last month
- A Python library for phylogenetic scripting, simulation, data processing and manipulation.☆222Updated last week
- The Ribosome Binding Site (RBS) Calculator can predict the translation initiation rate of a protein coding sequence in bacteria and desig…☆57Updated 10 years ago
- Find common blocks and differences between DNA sequences☆42Updated 6 months ago
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated 2 years ago
- Mackinac: A bridge between ModelSEED and COBRApy☆19Updated 7 years ago
- A high-fidelity E. coli RNA-seq compendium☆33Updated 4 years ago