biocore / tax2treeLinks
Automated taxonomy decoration onto a tree
☆15Updated 2 years ago
Alternatives and similar repositories for tax2tree
Users that are interested in tax2tree are comparing it to the libraries listed below
Sorting:
- Protein Alignment and Detection Interface☆60Updated last year
- PaperBLAST: find papers about a protein or its homologs☆46Updated this week
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- A simple command-line tool to download data from Joint Genome Institute databases☆52Updated 2 years ago
- annotation pipeline for microbial genomes and metagenomes☆18Updated 7 years ago
- Partitioning and analysis methods for large, complex sequence datasets☆38Updated 6 years ago
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆93Updated 4 months ago
- Python bindings for the TaxonKit library☆40Updated 2 months ago
- visualising sequence similarity with Circos☆41Updated 6 years ago
- Database of genomes integrated from the gut microbiome and other environments☆44Updated 2 years ago
- ☆31Updated last year
- MEGAN Community Edition☆72Updated last year
- The MG-RAST Backend -- the API server☆45Updated 2 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- Locus and lineage tests for bacterial GWAS☆29Updated 7 years ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆60Updated 6 years ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- An integrated pipeline for estimating strain-level genomic variation from metagenomic data☆129Updated last year
- StrainFinder☆27Updated 7 years ago
- De novo Extraction of Strains from MetAgeNomes☆71Updated 5 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- An imagemagick-like frontend to Biopython SeqIO☆116Updated last year
- Highly customizable, ambiguity-aware dotplots for visual sequence analyses☆92Updated 3 months ago
- Flash2 has some improvements from flash_1 including new logic from innie and outie overlaps as well as some initial steps for flash for a…☆50Updated 7 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆49Updated 4 years ago
- Visualization of the pan-genome output by panX☆64Updated 3 months ago
- Functional Analysis of Metagenomes by Likelihood Inference☆17Updated 2 weeks ago
- Tandem Repeat Annotation Library☆25Updated 2 years ago
- MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds☆33Updated 9 years ago