Automated taxonomy decoration onto a tree
☆18Jul 16, 2026Updated last month
Alternatives and similar repositories for tax2tree
Users that are interested in tax2tree are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆28Feb 27, 2024Updated 2 years ago
- Improved contact predictions using the recognition of protein like contact patterns.☆14May 18, 2018Updated 8 years ago
- Read contamination removal☆25Jan 24, 2024Updated 2 years ago
- Woltka: a versatile meta'omic data classifier☆81Sep 8, 2025Updated 11 months ago
- ☆14Jul 21, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Bacterial Operon Finder for Functional Organization☆14Nov 14, 2023Updated 2 years ago
- Wastewater-Based Epidemiology using Phylogenetic Placements☆19Aug 20, 2026Updated last week
- annotation pipeline for microbial genomes and metagenomes☆18Feb 23, 2018Updated 8 years ago
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Nov 12, 2025Updated 9 months ago
- Distance-based Phylogenetic Placer☆23Jul 13, 2026Updated last month
- Real-time species-typing visualisation for nanopore data.☆12Apr 11, 2023Updated 3 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Mar 5, 2018Updated 8 years ago
- Python bindings for the TaxonKit library☆43Aug 3, 2026Updated 3 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A visualization tool for exploratory data analysis of metagenomic data☆40Mar 22, 2022Updated 4 years ago
- Paired reads mapping on de Bruijn graph☆13Jan 15, 2019Updated 7 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Dec 5, 2018Updated 7 years ago
- Robust Aitchison PCA from sparse count data☆37Aug 17, 2022Updated 4 years ago
- Automated optimisation of de-novo transcriptome assembly☆25Nov 11, 2015Updated 10 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- Scotch pipeline for indel calling.☆10Nov 25, 2019Updated 6 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Emperor a tool for the analysis and visualization of large microbial ecology datasets☆54Jan 12, 2026Updated 7 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆17May 22, 2023Updated 3 years ago
- ☆14Apr 4, 2023Updated 3 years ago
- De novo genome assembler.☆12Jul 30, 2018Updated 8 years ago
- OHMI: The Ontology of Host-Microbiome Interactions☆12May 14, 2026Updated 3 months ago
- Ontology-aware neural network (ONN) for microbial community sample source tracking!☆10Oct 11, 2022Updated 3 years ago
- C++ tools for NCBI taxonomy tasks☆12Jun 26, 2025Updated last year
- Finding prophage regions in bacterial genomes using brute force☆22Jan 20, 2023Updated 3 years ago
- Confirming specific taxonomic groups within your samples.☆19Dec 21, 2020Updated 5 years ago
- blast, shmlast☆21Oct 5, 2020Updated 5 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- High throughput tool for tall and wide multiple sequence alignment.☆31Aug 9, 2026Updated 3 weeks ago
- ☆16Jun 2, 2021Updated 5 years ago
- SaffronTree: Reference free rapid phylogenetic tree construction from raw read data☆25Jun 11, 2020Updated 6 years ago
- A Python library for fast, thread-safe computations on phylogenetic trees☆30Feb 19, 2026Updated 6 months ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆42Apr 6, 2026Updated 4 months ago
- Repository of the integrated mouse gut metagenomic catalog☆20Mar 14, 2022Updated 4 years ago
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago