biocore / tax2tree
Automated taxonomy decoration onto a tree
☆14Updated last year
Related projects ⓘ
Alternatives and complementary repositories for tax2tree
- Robust Aitchison PCA from sparse count data☆33Updated 2 years ago
- annotation pipeline for microbial genomes and metagenomes☆18Updated 6 years ago
- StrainFinder☆27Updated 6 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated last year
- PaperBLAST: find papers about a protein or its homologs☆35Updated this week
- Sparse Cooccurence Network Investigation for Compositional data☆23Updated last week
- Protein Alignment and Detection Interface☆60Updated 7 months ago
- ☆43Updated last year
- scripts for estimating bacteria replication rates based on population genome copy number variation☆68Updated 4 years ago
- ☆12Updated 5 years ago
- qiime2 plugin for aldex2 for differential abundance analysis☆10Updated 4 years ago
- De novo Extraction of Strains from MetAgeNomes☆69Updated 4 years ago
- ☆35Updated this week
- Pipeline for major biological analyses.☆34Updated 2 years ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆56Updated 5 years ago
- Estimate metagenomic coverage and sequence diversity☆46Updated 3 months ago
- GraftM - Rapid community profiles from metagenomes☆44Updated 3 months ago
- Locus and lineage tests for bacterial GWAS☆30Updated 7 years ago
- Bacterial Annotation by Learned Representation of Genes☆54Updated 3 years ago
- Database of genomes integrated from the gut microbiome and other environments☆44Updated last year
- visualising sequence similarity with Circos☆39Updated 5 years ago
- ☆30Updated 6 months ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆43Updated 4 years ago
- ☆13Updated 2 weeks ago
- PHANOTATE: a tool to annotate phage genomes.☆69Updated 3 weeks ago
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆45Updated 2 years ago
- Partitioning and analysis methods for large, complex sequence datasets☆38Updated 6 years ago
- Improving genome bins through the combination of different binning programs☆31Updated last year
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆32Updated last year
- SHallow shOtGUN profiler☆54Updated 2 years ago