biocore / tax2treeLinks
Automated taxonomy decoration onto a tree
☆15Updated 2 years ago
Alternatives and similar repositories for tax2tree
Users that are interested in tax2tree are comparing it to the libraries listed below
Sorting:
- PaperBLAST: find papers about a protein or its homologs☆47Updated 2 months ago
- Protein Alignment and Detection Interface☆60Updated last year
- StrainFinder☆29Updated 7 years ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆61Updated 6 years ago
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- De novo Extraction of Strains from MetAgeNomes☆71Updated 5 years ago
- PHANOTATE: a gene caller for phages.☆78Updated 11 months ago
- ☆31Updated last year
- MEGAN Community Edition☆72Updated last year
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Partitioning and analysis methods for large, complex sequence datasets☆38Updated 7 years ago
- annotation pipeline for microbial genomes and metagenomes☆18Updated 7 years ago
- Detection of incorrectly labeled sequences across kingdoms☆86Updated 3 years ago
- Database of genomes integrated from the gut microbiome and other environments☆44Updated 2 years ago
- SINA - Reference based multiple sequence alignment☆41Updated 4 years ago
- A simple command-line tool to download data from Joint Genome Institute databases☆52Updated 2 years ago
- Convert GTDB taxonomy to NCBI taxdump format☆72Updated 2 years ago
- An integrated pipeline for estimating strain-level genomic variation from metagenomic data☆130Updated 2 years ago
- Sparse Cooccurence Network Investigation for Compositional data☆25Updated last year
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 8 years ago
- Locus and lineage tests for bacterial GWAS☆29Updated 8 years ago
- Scalable creating/updating of metagenome profiling databases☆62Updated 4 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆65Updated last month
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆68Updated 4 years ago
- Robust Aitchison PCA from sparse count data☆37Updated 3 years ago
- de novo virus assembler of Illumina paired reads☆58Updated 4 years ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆129Updated last year
- ☆31Updated 10 months ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated 2 weeks ago