Nature Computational Science: Predicting drug responses of unseen cell types through transfer learning with foundation models
☆41Feb 2, 2026Updated 5 months ago
Alternatives and similar repositories for CRISP
Users that are interested in CRISP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- scSurvival is a new tool for survival analysis from single cell cohort dataset.☆24Apr 27, 2026Updated 2 months ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated last year
- ☆19Jan 11, 2026Updated 6 months ago
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated last year
- ☆52Jun 16, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.☆10Jul 9, 2026Updated 2 weeks ago
- An eXplainable Cell-specific machine learning method to predict clinical Phenotypes using single-cell multi-omics☆15Sep 23, 2025Updated 10 months ago
- A Predictive World Model of the Transcriptome☆35Oct 18, 2025Updated 9 months ago
- CellNavi is a deep learning framework designed to predict genes driving cellular transitions.☆51Jul 10, 2026Updated 2 weeks ago
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression☆16Jun 28, 2024Updated 2 years ago
- ☆23Apr 30, 2025Updated last year
- PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…☆84Dec 13, 2024Updated last year
- UNAGI: deep generative AI for virtual disease and unsuperivsed in-silico perturbations.☆60Updated this week
- SIDISH: Semi-supervised Iterative Deep Learning for Identifying Single-cell High-risk Populations☆23Jan 23, 2026Updated 6 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Identifying cell subpopulational differences among single-cell biospecimens☆17Sep 27, 2024Updated last year
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆41Jun 7, 2026Updated last month
- ☆178Jan 30, 2026Updated 5 months ago
- PDD: Awesome Phenotypic Drug Discovery☆41Oct 17, 2025Updated 9 months ago
- A library for the deconvolution of bulk cell samples using single-cell RNA expression data.☆23Nov 3, 2021Updated 4 years ago
- Perturbational analysis by causality-aware generative model for single-cell RNA-sequencing data☆23Dec 16, 2025Updated 7 months ago
- IAN: An Intelligent System for Omics Data Analysis and Discovery☆15Feb 23, 2026Updated 5 months ago
- ☆11Apr 1, 2024Updated 2 years ago
- Long Long Term Memory Neural Net Cells☆10Jan 25, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆14May 13, 2026Updated 2 months ago
- ☆12Jan 8, 2026Updated 6 months ago
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆386Feb 1, 2025Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆32Dec 3, 2024Updated last year
- Use hodge decomposition for trajectory analysis☆26May 11, 2026Updated 2 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Jan 11, 2025Updated last year
- ☆36Apr 15, 2025Updated last year
- Single-cell perturbation effects prediction benchmark☆92May 6, 2026Updated 2 months ago
- [NBME] Interpretable identification of cancer genes across biological networks via transformer-powered graph representation learning☆24Sep 2, 2025Updated 10 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- scMODAL: A general deep learning framework for single-cell Multi-Omics Data Alignment with feature Links☆23Jun 10, 2025Updated last year
- ☆49Jan 28, 2026Updated 5 months ago
- ☆17Jul 8, 2024Updated 2 years ago
- AetherCell is a hierarchical generative framework designed to predict context-specific transcriptomic responses to drugs and genetic pert…☆20Updated this week
- Python package to interactively annotate histological images within a jupyter notebook☆18Oct 20, 2025Updated 9 months ago
- Robust and scalable single-cell signature scoring☆28Updated this week
- Tutorial for using the perturbseq library to load and manipulate experiments☆24Aug 7, 2019Updated 6 years ago