bioinformatics-core-shared-training / cruk-bioinf-sschool
http://bioinformatics-core-shared-training.github.io/cruk-bioinf-sschool
☆34Updated 8 years ago
Related projects ⓘ
Alternatives and complementary repositories for cruk-bioinf-sschool
- A course on Analysing Next Generation (/High Throughput etc..) Sequencing data using Bioconductor☆39Updated 8 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- combining p-values using modified stouffer-liptak for spatially correlated results (probes)☆44Updated 2 years ago
- Course homepages for some of the courses given at SciLifeLab☆21Updated 4 years ago
- R package for bcbio RNA-seq analysis.☆58Updated 2 months ago
- Summer school course materials collection☆25Updated 6 years ago
- Bioinformatics analysis scripts, workflows, general code examples☆53Updated 3 years ago
- bradner lab computation pipeline scripts☆53Updated 3 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- ☆29Updated 5 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆35Updated 6 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆34Updated last year
- Transcript quantification import with automatic metadata detection☆67Updated 3 weeks ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆54Updated 4 years ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 3 years ago
- Detecting intron retention from RNA-Seq experiments☆53Updated 3 months ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆39Updated 3 years ago
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆29Updated 11 months ago
- Quality of RNA-Seq Toolset☆52Updated 5 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- R package for inferring copy number from read depth☆31Updated 2 years ago
- The SomaticSignatures package offers the framework for identifying mutational signatures of single nucleotide variants (SNVs) from high-t…☆22Updated 4 years ago
- ☆65Updated last year
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48Updated 5 years ago
- RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code …☆54Updated 11 years ago
- Tutorial for AMSI BioInfoSummer 2018☆29Updated 5 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆66Updated 3 weeks ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆62Updated 4 years ago
- create, manage, and upload track hubs for use in the UCSC genome browser☆52Updated 6 months ago
- Junction Based Analysis of Splicing Events for RNA-Seq☆30Updated 6 years ago