Alternatives and similar repositories for cruk-bioinf-sschool:

Users that are interested in cruk-bioinf-sschool are comparing it to the libraries listed below

• bioinformatics-core-shared-training / ngs-in-bioc
  A course on Analysing Next Generation (/High Throughput etc..) Sequencing data using Bioconductor
  ☆41Updated 8 years ago
• SciLifeLab / courses
  Course homepages for some of the courses given at SciLifeLab
  ☆21Updated 5 years ago
• saketkc / rna-seq-snakemake
  Snakemake based pipeline for RNA-Seq analysis
  ☆31Updated 5 years ago
• arq5x / bedtools-protocols
  ☆78Updated 11 years ago
• stevekm / Bioinformatics
  Bioinformatics analysis scripts, workflows, general code examples
  ☆53Updated 4 years ago
• mani2012 / BatchQC
  Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.
  ☆35Updated last year
• brwnj / umitools
  Tools to handle reads sequenced with unique molecular identifiers (UMIs).
  ☆30Updated 7 years ago
• maxplanck-ie / rna-seq-qc
  Rna-seq pipeline, From FASTQ to differential expression analysis...
  ☆20Updated 8 years ago
• hms-dbmi / spp
  SPP - R package for analysis of ChIP-seq and other functional sequencing data
  ☆42Updated 3 years ago
• hbc / bcbioRNASeq
  R package for bcbio RNA-seq analysis.
  ☆62Updated 6 months ago
• hbctraining / Intro-to-rnaseq-hpc-salmon
  ☆48Updated 4 years ago
• bioinformatics-core-shared-training / cruk-summer-school-2018
  Summer school course materials collection
  ☆25Updated 6 years ago
• ucdavis-bioinformatics-training / 2017_2018-single-cell-RNA-sequencing-Workshop-UCD_UCB_UCSF
  2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF
  ☆36Updated 6 years ago
• olgabot / rna-seq-diff-exprn
  RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code …
  ☆55Updated 12 years ago
• ge11232002 / TFBSTools
  Software Package for Transcription Factor Binding Site (TFBS) Analysis
  ☆28Updated 3 weeks ago
• daler / trackhub
  create, manage, and upload track hubs for use in the UCSC genome browser
  ☆53Updated 11 months ago
• kundajelab / phantompeakqualtools
  This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…
  ☆59Updated 4 years ago
• parklab / ShatterSeek
  ☆67Updated last year
• crazyhottommy / pyflow-RNAseq
  RNAseq pipeline based on snakemake
  ☆25Updated 2 years ago
• TheJacksonLaboratory / JAXBD2K-ShortCourse
  This repository contains course materials from JAX-BD2K workshop.
  ☆31Updated 5 years ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 2 years ago
• bgruening / galaxy-rna-workbench
  Galaxy RNA workbench
  ☆39Updated 4 years ago
• thelovelab / tximeta
  Transcript quantification import with automatic metadata detection
  ☆67Updated 2 months ago
• slowkow / picardmetrics
  Run Picard on BAM files and collate 90 metrics into one file.
  ☆41Updated 7 years ago
• AstraZeneca-NGS / disambiguate
  Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem
  ☆31Updated 6 years ago
• shawnzhangyx / PePr
  a peak-calling and differential analysis tool for replicated ChIP-Seq data
  ☆37Updated 2 years ago
• Danko-Lab / rtfbs_db
  Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.
  ☆22Updated 6 years ago
• hartleys / QoRTs
  Quality of RNA-Seq Toolset
  ☆53Updated 5 years ago
• ratschlab / RiboDiff
  RiboDiff: Tool to detect changes in translational efficiency based on ribosome footprinting data
  ☆23Updated 8 years ago
• brentp / combined-pvalues
  combining p-values using modified stouffer-liptak for spatially correlated results (probes)
  ☆44Updated 3 years ago