mgonzalezporta / TeachingMaterial
RNA-seq data analysis practical
☆61Updated 10 years ago
Alternatives and similar repositories for TeachingMaterial
Users that are interested in TeachingMaterial are comparing it to the libraries listed below
Sorting:
- Integrative pathway enrichment analysis of multivariate omics data☆109Updated 9 months ago
- ATAC-seq snakemake pipeline☆87Updated 5 years ago
- ☆116Updated last year
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 4 years ago
- Analysis pipeline for ATAC-seq Data☆60Updated 3 years ago
- A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, …☆61Updated 5 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Course material in notebook format for learning about single cell bioinformatics methods☆102Updated 8 years ago
- Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor☆78Updated 8 years ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆108Updated 5 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆93Updated 7 months ago
- Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq☆51Updated 5 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 4 months ago
- Pipeline for processing inDrops sequencing data☆76Updated 6 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 4 years ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆92Updated 7 years ago
- R package containing useful functions for mutational signature analysis☆81Updated this week
- A pipeline to process m6A-seq data and down stream analysis.☆44Updated 4 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 6 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆147Updated 4 years ago
- ☆57Updated 4 years ago
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- microRNA profiling pipeline☆77Updated 3 years ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆72Updated 6 years ago
- RNA-seq Quantification of Alternative Polyadenylation☆46Updated last year
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆101Updated 2 years ago
- ☆61Updated 4 years ago