mgonzalezporta / TeachingMaterialLinks
RNA-seq data analysis practical
☆61Updated 11 years ago
Alternatives and similar repositories for TeachingMaterial
Users that are interested in TeachingMaterial are comparing it to the libraries listed below
Sorting:
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- microRNA profiling pipeline☆79Updated 3 years ago
- Code for biostar tutorials - mostly R and Perl☆50Updated last year
- ☆72Updated 3 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆114Updated 2 months ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated 2 years ago
- Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor☆79Updated 8 years ago
- ☆118Updated 2 years ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆110Updated 5 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆95Updated 4 years ago
- Course material in notebook format for learning about single cell bioinformatics methods☆99Updated 9 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆103Updated 2 years ago
- Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq☆51Updated 5 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- RNA-Seq analysis workflow☆104Updated 4 years ago
- RNA-seq Quantification of Alternative Polyadenylation☆47Updated 2 months ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆147Updated 5 years ago
- DNA methylation analysis notes from Ming Tang☆87Updated 5 years ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 4 years ago
- ☆61Updated 5 years ago
- A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, …☆61Updated 6 years ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆93Updated 8 years ago
- ☆88Updated 2 months ago
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated last year
- Bioinformatics Workflows☆19Updated 4 years ago
- GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, miRNA and mRNA data in GDC☆66Updated 2 years ago
- A short tutorial on how to use RSEM☆138Updated 5 years ago
- Create KEGG.db Package☆61Updated 2 years ago