Alternatives and similar repositories for anyvar

Users that are interested in anyvar are comparing it to the libraries listed below

• biocommons / bioutils
  provides common tools and lookup tables used primarily by the hgvs and uta packages
  ☆24Updated 4 months ago
• biocommons / biocommons.seqrepo
  non-redundant, compressed, journalled, file-based storage for biological sequences
  ☆47Updated last month
• ga4gh / htsget
  Python client for GA4GH htsget protocol
  ☆15Updated 3 years ago
• varfish-org / hgvs-rs
  A port of biocommons/hgvs to the Rust programming language
  ☆15Updated this week
• stjude-rust-labs / chainfile
  A crate for working with genomics chain files.
  ☆12Updated 5 months ago
• biocommons / uta
  Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…
  ☆71Updated 2 months ago
• EliLillyCo / pytest-wdl
  WDL plugin for pytest
  ☆49Updated 2 years ago
• biobuilds / biobuilds
  Curated collection of open-source bioinformatics tools
  ☆28Updated 6 years ago
• fulcrumgenomics / guide-counter
  A better, faster way to count guides in CRISPR screens.
  ☆34Updated 8 months ago
• cancervariants / metakb
  Central repository for the VICC metakb web application
  ☆15Updated this week
• bigdatagenomics / cannoli
  Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.
  ☆41Updated 10 months ago
• evoldoers / machineboss
  Bioinformatics Open Source Sequence machine
  ☆32Updated 2 years ago
• SamStudio8 / majora2
  Malleable All-seeing Journal Of Research Artifacts
  ☆35Updated 2 years ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 6 years ago
• nextflow-io / nf-sqldb
  SQL support plugin for Nextflow
  ☆32Updated 3 months ago
• SACGF / cdot
  Transcript versions for HGVS libraries
  ☆33Updated 2 months ago
• johanneskoester / alpaca
  ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…
  ☆23Updated last year
• dnanexus / wdlTools
  WDL tools for parsing, type-checking, and more
  ☆27Updated 4 months ago
• brentp / quicksect
  a cythonized, extended version of the interval search tree in bx
  ☆30Updated 6 years ago
• ababaian / bioFreelancers
  Freelance bioinformaticians directory
  ☆10Updated 2 years ago
• aquaskyline / Skyhawk
  An Artificial Neural Network-based discriminator for validating clinically significant genomic variants
  ☆35Updated 2 years ago
• hammerlab / bai-indexer
  Build an index for your BAM Index (BAI)
  ☆17Updated 10 years ago
• Ad115 / EnsemblRest
  A Python interface to the Ensembl REST APIs, biological data at your fingertips.
  ☆11Updated last year
• broadinstitute / wdl-runner
  Easily run WDL workflows on GCP
  ☆14Updated 4 years ago
• schatzlab / biomedicalresearch2021
  Course Materials for EN.601.452 / AS.020.415 Computational Biomedical Research & Advanced Biomedical Research
  ☆13Updated 4 years ago
• ncbi / magicblast
  ☆36Updated 8 months ago
• brentp / hts-python
  pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)
  ☆49Updated 8 years ago
• disq-bio / disq
  A library for manipulating bioinformatics sequencing formats in Apache Spark
  ☆32Updated 3 weeks ago
• epiviz / epiviz
  EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding o…
  ☆71Updated 2 years ago
• tobiasrausch / nRex
  nRex: Germline and somatic single-nucleotide, short indel and structural variant calling
  ☆12Updated 3 months ago