Alternatives and similar repositories for anyvar

Users that are interested in anyvar are comparing it to the libraries listed below

• biocommons / bioutils
  provides common tools and lookup tables used primarily by the hgvs and uta packages
  ☆22Updated 3 months ago
• biocommons / biocommons.seqrepo
  non-redundant, compressed, journalled, file-based storage for biological sequences
  ☆41Updated 2 months ago
• cancervariants / metakb
  Central repository for the VICC metakb web application
  ☆15Updated last week
• varfish-org / hgvs-rs
  A port of biocommons/hgvs to the Rust programming language
  ☆13Updated last week
• stjude-rust-labs / chainfile
  A crate for working with genomics chain files.
  ☆11Updated 5 months ago
• SACGF / cdot
  Transcript versions for HGVS libraries
  ☆31Updated this week
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 5 years ago
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆57Updated this week
• biocommons / uta
  Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…
  ☆65Updated 3 months ago
• EliLillyCo / pytest-wdl
  WDL plugin for pytest
  ☆48Updated last year
• SamStudio8 / majora2
  Malleable All-seeing Journal Of Research Artifacts
  ☆36Updated 2 years ago
• nextflow-io / nf-sqldb
  SQL support plugin for Nextflow
  ☆28Updated 3 weeks ago
• fulcrumgenomics / guide-counter
  A better, faster way to count guides in CRISPR screens.
  ☆31Updated 2 months ago
• dnanexus / wdlTools
  WDL tools for parsing, type-checking, and more
  ☆25Updated 2 months ago
• evoldoers / machineboss
  Bioinformatics Open Source Sequence machine
  ☆33Updated last year
• tobiasrausch / nRex
  nRex: Germline and somatic single-nucleotide, short indel and structural variant calling
  ☆12Updated 2 months ago
• personalis / hgvslib
  hgvslib provides functions to parse and compare the equivalency of variant strings described according to Human Genome Variation Society …
  ☆18Updated 2 years ago
• fulcrumgenomics / fgpyo
  Quality of life improvements for Bioinformatics in Python.
  ☆29Updated 2 weeks ago
• brentp / rare-disease-wf
  (WIP) best-practices workflow for rare disease
  ☆60Updated 11 months ago
• bigdatagenomics / cannoli
  Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.
  ☆41Updated 3 months ago
• ga4gh / htsget
  Python client for GA4GH htsget protocol
  ☆15Updated 2 years ago
• quinlan-lab / pathoscore
  pathoscore evaluates variant pathogenicity tools and scores.
  ☆21Updated 3 years ago
• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆20Updated 2 years ago
• cancervariants / variation-normalization
  Services and guidelines for normalizing variants
  ☆14Updated last week
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆33Updated 3 weeks ago
• mutalyzer / mutalyzer
  Tool suite for HGVS variant descriptions
  ☆41Updated last week
• ga4gh / vrs
  Extensible specification for representing and uniquely identifying biological sequence variation
  ☆88Updated 2 months ago
• mlin / spVCF
  Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently
  ☆58Updated last year
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆62Updated last month
• brentp / quicksect
  a cythonized, extended version of the interval search tree in bx
  ☆30Updated 6 years ago