simplified searching, fetching, and parsing records from NCBI using their E-utilities interface
☆64Feb 9, 2026Updated 2 months ago
Alternatives and similar repositories for eutils
Users that are interested in eutils are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A simple Python interface to the NCBI databases (Entrez).☆25Dec 22, 2025Updated 3 months ago
- GA4GH Variation Representation Python Implementation☆62Apr 6, 2026Updated last week
- a module to calculate the MeSH similarity☆26Apr 13, 2021Updated 5 years ago
- ☆43Feb 26, 2020Updated 6 years ago
- Python library to parse, format, validate, normalize, and map sequence variants according to HGVS Nomenclature (https://hgvs-nomenclature…☆288Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- The mwtab package is a Python library that facilitates reading and writing files in mwTab format used by the Metabolomics Workbench for a…☆12Jan 20, 2026Updated 2 months ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Jun 11, 2020Updated 5 years ago
- Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!☆15Jun 10, 2024Updated last year
- Burrows-Wheeler Aligner for x86,x86_64, arm and aarch64 architectures (PC, Raspberry PI, ODROID, M1)☆10Apr 13, 2022Updated 4 years ago
- An amino acid sequence annotator☆17May 15, 2025Updated 11 months ago
- Confidence Estimation for Mass Spectrometry Proteomics☆14May 28, 2025Updated 10 months ago
- MeSH Enrichment and Semantic analyses☆12Dec 23, 2025Updated 3 months ago
- Toil workflows for common genomic pipelines☆33Oct 3, 2019Updated 6 years ago
- BlasterJS - an open source JS library to display Blast results☆21Oct 18, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆15May 30, 2025Updated 10 months ago
- MuDCoD: Multi-subject Dynamic Community Detection☆11Mar 18, 2025Updated last year
- Consensus assembly and variant calling workflow.☆12May 26, 2015Updated 10 years ago
- Haplotype-based somatic genome simulator☆10May 19, 2017Updated 8 years ago
- A Bioconductor R package - Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics☆16Mar 12, 2026Updated last month
- Metabolomics experimental design, sample metadata configuration, and sample data acquisition.☆11Jun 28, 2018Updated 7 years ago
- NetSurfP 3.0: Protein secondary structure and relative solvent accessibility prediction☆24Jun 21, 2023Updated 2 years ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Apr 25, 2023Updated 2 years ago
- A Variant Call Format reader for Python.☆59May 6, 2025Updated 11 months ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Repository for development of the genomic module of the CDM.☆25Jun 14, 2019Updated 6 years ago
- Biomedical wordlists (of drugs, genes, etc) for several text mining projects☆19Apr 3, 2023Updated 3 years ago
- Exploring retrieval systems for language models☆14Apr 12, 2025Updated last year
- Nature Medicine paper. A Multidimensional Precision Medicine Approach for Autism Subtype Identification.☆14Aug 11, 2020Updated 5 years ago
- normalize, left-align, trim, validate and clean VCF files☆20Jul 22, 2015Updated 10 years ago
- Vaccine Adverse Events Annoted☆14Nov 8, 2018Updated 7 years ago
- non-redundant, compressed, journalled, file-based storage for biological sequences☆50Nov 10, 2025Updated 5 months ago
- Processing WGS aDNA data using the ReichLab protocol☆13Mar 8, 2019Updated 7 years ago
- FlameGraphs for Go☆19Sep 23, 2014Updated 11 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- List and download schemes from pubMLST.org and other BIGSDB servers☆10Oct 14, 2024Updated last year
- Analysis platform for large-scale dose-dependent data☆27Nov 25, 2025Updated 4 months ago
- Fast and flexible semi-supervised learning for peptide detection in Python☆50Feb 27, 2025Updated last year
- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python☆31Feb 12, 2026Updated 2 months ago
- A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…☆21Sep 6, 2016Updated 9 years ago
- MCP server for the NCBI E-utilities API. Search PubMed, fetch article metadata and full text, generate citations, explore MeSH terms, and…☆76Apr 9, 2026Updated last week
- Misc. documents for the Bioinformatics Open Source Conference (BOSC), https://www.open-bio.org/events/bosc/☆13Apr 6, 2026Updated last week