LirongWu / Prompt-DDG
Code for ICML 2024 paper "Learning to Predict Mutational Effects of Protein-Protein Interactions by Microenvironment-aware Hierarchical Prompt Learning"
☆37Updated 5 months ago
Alternatives and similar repositories for Prompt-DDG:
Users that are interested in Prompt-DDG are comparing it to the libraries listed below
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆91Updated last year
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆62Updated 5 months ago
- Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)☆60Updated 7 months ago
- Implementation of ICLR23 paper "Molecule Generation for Target Protein Binding with Structural Motifs"☆62Updated 10 months ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆102Updated 2 weeks ago
- Official repository of ReactZyme☆26Updated 5 months ago
- PyTorch code for KDD 2023 paper "Pre-training Antibody Language Models for Antigen-Specific Computational Antibody Design"☆50Updated last year
- [NeurIPS 2023] DrugCLIP: Contrastive Protein-Molecule Representation Learning for Virtual Screening☆80Updated 10 months ago
- This repo contains the codes for our paper "Generalist Equivariant Transformer Towards 3D Molecular Interaction Learning" (ICML 2024).☆29Updated 5 months ago
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆33Updated last year
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆57Updated 8 months ago
- Code for AAAI 2024 paper "PSC-CPI: Multi-Scale Protein Sequence-Structure Contrasting for Efficient and Generalizable Compound-Protein In…☆26Updated last month
- A Text-guided Protein Design Framework, Nat Mach Intell 2025☆54Updated 2 months ago
- ☆22Updated 11 months ago
- Codes for our paper "Full-Atom Peptide Design with Geometric Latent Diffusion" (NeurIPS 2024)☆49Updated last week
- GeoSSL: Molecular Geometry Pretraining with SE(3)-Invariant Denoising Distance Matching, ICLR'23 (https://openreview.net/forum?id=CjTHVo1…☆46Updated last year
- ☆22Updated last month
- [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design☆52Updated last week
- ☆64Updated last month
- ☆21Updated 5 months ago
- Protein-protein interacting site predictor using deep graph convolutional network☆12Updated 2 years ago
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆39Updated last year
- [ICLR 2024] Protein-Ligand Interaction Prior for Binding-aware 3D Molecule Diffusion Models☆33Updated 6 months ago
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆40Updated 2 weeks ago
- ☆39Updated 2 years ago
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆46Updated last year
- PSICHIC (pronounced Psychic) - PhySIcoCHemICal graph neural network for learning protein-ligand interaction fingerprints from sequence da…☆94Updated 8 months ago
- MolDiff: Addressing the Atom-Bond Inconsistency Problem in 3D Molecule Diffusion Generation☆43Updated 7 months ago
- Interpretable AI pipeline improving binding predictions for novel protein targets and ligands☆37Updated 10 months ago