Transformer Based Language Model for Peptide Property Prediction
☆57Aug 2, 2024Updated 2 years ago
Alternatives and similar repositories for PeptideBERT
Users that are interested in PeptideBERT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Web cards/apps describing peptides☆31Apr 26, 2023Updated 3 years ago
- p-IgGen: A Generative Paired Antibody Language Model☆13May 6, 2025Updated last year
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆31Aug 10, 2023Updated 3 years ago
- webserver☆31Jun 4, 2025Updated last year
- Implementation of CycPeptMP, an accurate and efficient model for predicting the membrane permeability of cyclic peptides☆34May 10, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆18Oct 16, 2025Updated 9 months ago
- ☆24Feb 20, 2025Updated last year
- ☆15Nov 20, 2024Updated last year
- HELM-GPT: de novo macrocyclic peptide design using generative pre-trained transformer☆36May 15, 2026Updated 2 months ago
- Prediction of glycopeptide fragment mass spectra by deep learning☆12Feb 20, 2024Updated 2 years ago
- ☆23Mar 28, 2024Updated 2 years ago
- In silico directed evolution of peptide binders with AlphaFold☆274Apr 24, 2026Updated 3 months ago
- Peptide library design☆23Sep 8, 2020Updated 5 years ago
- EViS: an Enhanced Virtual Screening Approach based on Pocket Ligand Similarity☆14Dec 7, 2021Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆62Oct 25, 2023Updated 2 years ago
- Predicting Nanobody Binding Epitopes Based on a Pretrained RoBERTa-based Model☆16Jun 4, 2024Updated 2 years ago
- Code for ICML 2023 paper "Reprogramming Pretrained Language Models for Antibody Sequence Infilling"☆24Sep 18, 2025Updated 10 months ago
- ☆13Aug 18, 2023Updated 2 years ago
- Heuristic energy-based cyclic peptide design☆15Feb 21, 2025Updated last year
- neuropeptide prediction☆15Sep 2, 2022Updated 3 years ago
- Official repository for DiffPepBuilder and DiffPepDock tools☆130Oct 24, 2025Updated 9 months ago
- Generator and regressor neural networks for antimicrobial peptides☆25Jan 30, 2024Updated 2 years ago
- Code for peptide ligand design with machine learning models.☆35Dec 8, 2024Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆69Apr 2, 2025Updated last year
- ☆17Jun 10, 2026Updated 2 months ago
- Antimicrobial Peptide Structural Evolution Miner (AMP-SEMiner), an integrated AI framework designed for the simultaneous identification o…☆15May 10, 2025Updated last year
- Antibody Langauge Ensemble Fusion - fuses antibody structural ensemble and language representation for property prediction☆14Apr 23, 2024Updated 2 years ago
- Demo of diffusion models #DDPM applied to molecular dynamics of small peptide☆14Jan 26, 2024Updated 2 years ago
- source code for https://arxiv.org/abs/2005.11248 "Accelerating Antimicrobial Discovery with Controllable Deep Generative Models and Molec…☆109Sep 17, 2025Updated 10 months ago
- Code for NeurIPS 2023 paper "AVIDa-hIL6: A Large-Scale VHH Dataset Produced from an Immunized Alpaca for Predicting Antigen-Antibody Inte…☆22Nov 19, 2024Updated last year
- ☆13May 24, 2026Updated 2 months ago
- This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"☆20Jan 15, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Screen interactions with AlphaFold Multimer☆14Mar 10, 2025Updated last year
- Nature Computational Science: Unbiased organism-agnostic and highly sensitive signal peptide predictor with deep protein language model☆36Nov 10, 2025Updated 9 months ago
- Classification models for hemolytic nature and hemolytic activity predictions in peptide/protein sequences☆17May 16, 2026Updated 2 months ago
- Attentive deep learning model for antimicrobial peptide prediction☆65Jun 2, 2026Updated 2 months ago
- Collects software dedicated to predicting specific properties of peptides☆68Dec 17, 2024Updated last year
- ☆26May 19, 2024Updated 2 years ago
- ☆99Jul 24, 2026Updated 2 weeks ago