Alternatives and similar repositories for AsEP-dataset

Users that are interested in AsEP-dataset are comparing it to the libraries listed below

• TencentAI4S / IgGM
  [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design
  ☆74Updated 3 weeks ago
• WillHua127 / EnzymeFlow
  Official repository of EnzymeFlow
  ☆92Updated 6 months ago
• zhengkangjie / ESM-AA
  ☆71Updated 3 months ago
• DeepGraphLearning / S3F
  Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
  ☆36Updated 6 months ago
• jertubiana / ScanNet
  ☆126Updated last year
• BioinfoMachineLearning / DIPS-Plus
  The Enhanced Database of Interacting Protein Structures for Interface Prediction
  ☆49Updated last year
• wengong-jin / abdockgen
  ☆106Updated 2 years ago
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆113Updated 2 months ago
• J-SNACKKB / FLIP
  A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
  ☆100Updated 8 months ago
• lujiarui / Str2Str
  Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)
  ☆77Updated last year
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆96Updated 3 weeks ago
• Graylab / IgLM
  Generative Language Modeling for Antibody Design
  ☆149Updated 8 months ago
• wengong-jin / DSMBind
  ☆89Updated 7 months ago
• wengong-jin / RefineGNN
  ☆130Updated 2 years ago
• Wangchentong / Proteus
  Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
  ☆75Updated 11 months ago
• kiharalab / GNN_DOVE
  Code for "Protein Docking Model Evaluation by Graph Neural Networks"
  ☆59Updated 2 years ago
• Graylab / FLAb
  Fitness landscapes for antibodies
  ☆71Updated 4 months ago
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆97Updated 2 years ago
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆120Updated 3 weeks ago
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆42Updated 6 months ago
• WillHua127 / ReactZyme
  Official repository of ReactZyme
  ☆33Updated 7 months ago
• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆109Updated 3 months ago
• melobio / EvoPlay
  ☆73Updated last year
• GENTEL-lab / EnzymeCAGE
  ☆38Updated last week
• yehlincho / BoltzDesign1
  ☆112Updated this week
• DeepGraphLearning / DiffPack
  Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing
  ☆87Updated last year
• luost26 / RDE-PPI
  Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)
  ☆58Updated 11 months ago
• TencentAI4S / tfold
  open source code for Tencent tFold
  ☆100Updated 2 months ago
• divnori / rnaflow
  RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching
  ☆61Updated 9 months ago
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆106Updated 3 months ago