Alternatives and similar repositories for AsEP-dataset

Users that are interested in AsEP-dataset are comparing it to the libraries listed below

• Graylab / IgLM
  Generative Language Modeling for Antibody Design
  ☆160Updated 10 months ago
• J-SNACKKB / FLIP
  A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
  ☆104Updated 10 months ago
• Wangchentong / Proteus
  Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
  ☆80Updated last year
• levinthal / Pallatom
  ☆108Updated 2 months ago
• BioinfoMachineLearning / DIPS-Plus
  The Enhanced Database of Interacting Protein Structures for Interface Prediction
  ☆50Updated last year
• TencentAI4S / IgGM
  [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design
  ☆78Updated 3 months ago
• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆118Updated 5 months ago
• wengong-jin / RefineGNN
  ☆130Updated 2 years ago
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆103Updated 2 weeks ago
• wengong-jin / abdockgen
  ☆106Updated 2 years ago
• drorlab / DIPS
  Database of Interacting Protein Structures (DIPS)
  ☆102Updated last year
• WillHua127 / EnzymeFlow
  Official repository of EnzymeFlow
  ☆93Updated 8 months ago
• divnori / rnaflow
  RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching
  ☆66Updated last year
• DeepGraphLearning / S3F
  Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
  ☆43Updated 8 months ago
• anton-bushuiev / PPIRef
  Dataset and package for working with protein-protein interactions in 3D
  ☆95Updated 3 months ago
• LPDI-EPFL / masif-neosurf
  MaSIF-neosurf: surface-based protein design for ternary complexes.
  ☆140Updated this week
• leeyang / DRfold
  ☆40Updated last year
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆116Updated 5 months ago
• ProteinDesignLab / protein_seq_des
  Code for our paper "Protein sequence design with a learned potential"
  ☆79Updated last year
• DeepGraphLearning / DiffPack
  Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing
  ☆90Updated last year
• amyxlu / cheap-proteins
  Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…
  ☆132Updated 4 months ago
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆82Updated 2 months ago
• zhengkangjie / ESM-AA
  ☆75Updated 6 months ago
• HeliXonProtein / binding-ddg-predictor
  open source repository
  ☆139Updated last year
• wengong-jin / DSMBind
  ☆92Updated 10 months ago
• kirjner / GGS
  This repository implements Gibbs sampling with Graph-based Smoothing
  ☆39Updated last year
• Eikor / InstructPLM
  The first large protein language model trained follows structure instructions.
  ☆84Updated 3 months ago
• oxpig / AbLang
  AbLang: A language model for antibodies
  ☆146Updated last year
• BytedProtein / ByProt
  ☆199Updated 11 months ago
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆74Updated last week