BioinfoMachineLearning / DIPS-PlusLinks
The Enhanced Database of Interacting Protein Structures for Interface Prediction
☆53Updated 5 months ago
Alternatives and similar repositories for DIPS-Plus
Users that are interested in DIPS-Plus are comparing it to the libraries listed below
Sorting:
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆52Updated last month
- Database of Interacting Protein Structures (DIPS)☆103Updated 2 years ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆81Updated last year
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Updated last year
- ☆108Updated 2 years ago
- Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing☆89Updated 2 years ago
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆58Updated 2 years ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆85Updated last year
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆61Updated last year
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆124Updated 11 months ago
- Official repository of EnzymeFlow☆98Updated last year
- ☆80Updated last year
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆91Updated 7 months ago
- ☆65Updated 2 years ago
- Antibody-Antigen Docking and Affinity Benchmark☆76Updated 5 years ago
- 3D equivariant graph transformer for all-atom refinement of protein tertiary structures☆27Updated 2 years ago
- Open source code for AlphaFold.☆38Updated 3 years ago
- ☆96Updated last year
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆74Updated 2 years ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated 2 years ago
- Multi-Scale Representation Learning on Proteins (NeurIPS 2021)☆49Updated 2 years ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆41Updated last year
- ☆114Updated 3 years ago
- Dataset and package for working with protein-protein interactions in 3D☆104Updated 9 months ago
- Evaluating Protein Binding Interfaces with Transformer Networks☆47Updated 2 years ago
- Composing Unbalanced Flows for Flexible Docking and Relaxation (ICLR 2025)☆54Updated 7 months ago
- 🔥 PyTorch implementation of GNINA scoring function for molecular docking☆73Updated 11 months ago
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆56Updated last month
- ☆41Updated 2 years ago
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆27Updated last year