BioinfoMachineLearning / DIPS-Plus
The Enhanced Database of Interacting Protein Structures for Interface Prediction
☆48Updated last year
Alternatives and similar repositories for DIPS-Plus:
Users that are interested in DIPS-Plus are comparing it to the libraries listed below
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆44Updated 3 months ago
- [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design☆68Updated 2 weeks ago
- Database of Interacting Protein Structures (DIPS)☆99Updated last year
- Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures☆47Updated 3 years ago
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆57Updated 10 months ago
- ☆87Updated 6 months ago
- Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing☆85Updated last year
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆93Updated 9 months ago
- ☆106Updated 2 years ago
- ☆79Updated last year
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆54Updated last year
- ☆102Updated 2 years ago
- Multi-Scale Representation Learning on Proteins (NeurIPS 2021)☆46Updated last year
- ☆40Updated last year
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆27Updated last year
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆104Updated 2 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆74Updated 10 months ago
- Open source code for AlphaFold.☆39Updated 2 years ago
- Official repository of EnzymeFlow☆89Updated 5 months ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆75Updated last year
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆70Updated 6 months ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆38Updated 11 months ago
- Official implementation of "Generating 3D Molecules for Target Protein Binding" [ICML2022 Long Presentation]☆108Updated last year
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆115Updated last month
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- ☆65Updated last year
- Diffusion model based protein-ligand flexible docking method☆105Updated 6 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆59Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆62Updated last year
- Antibody-Antigen Docking and Affinity Benchmark☆71Updated 4 years ago