Alternatives and similar repositories for HEAL

Users that are interested in HEAL are comparing it to the libraries listed below

• biomed-AI / GraphPPIS
  ☆52Updated 11 months ago
• programmablebio / ptm-mamba
  ☆74Updated last month
• HySonLab / Protein_Pretrain
  Multimodal Pretraining for Unsupervised Protein Representation Learning
  ☆22Updated 11 months ago
• chao1224 / ProteinDT
  A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)
  ☆90Updated 6 months ago
• wyky481l / MMCD
  ☆30Updated 8 months ago
• duolinwang / S-PLM
  S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure
  ☆67Updated 3 weeks ago
• smiles724 / GNN-Bottleneck
  ☆40Updated last month
• zqgao22 / HIGH-PPI
  ☆87Updated 2 years ago
• emersON106 / SGPPI
  SGPPI: structure-aware prediction of protein-protein interactions in rigorous conditions with graph convolutional network
  ☆14Updated 2 years ago
• ykiiiiii / GraDe_IF
  Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)
  ☆66Updated 11 months ago
• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆113Updated 4 months ago
• biomed-AI / GraphSite
  GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures
  ☆60Updated 11 months ago
• Immortals-33 / Scaffold-Lab
  A comprehensive benchmark on the performances of multiple protein backbone generative models.
  ☆61Updated last month
• DeepRank / Deeprank-GNN
  Graph Network for protein-protein interface
  ☆120Updated last year
• LirongWu / Prompt-DDG
  Code for ICML 2024 paper "Learning to Predict Mutational Effects of Protein-Protein Interactions by Microenvironment-aware Hierarchical P…
  ☆41Updated 9 months ago
• SIAT-code / MASSA
  ☆23Updated last year
• ml4bio / RiboDiffusion
  ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models
  ☆50Updated 8 months ago
• dmis-lab / PerceiverCPI
  Bioinformatics'2022 PerceiverCPI: A nested cross-attention network for compound-protein interaction prediction
  ☆36Updated last year
• Profluent-Internships / MMDiff
  Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion
  ☆58Updated last year
• yazdanimehdi / AttentionSiteDTI
  This is The repository for Paper "AttentionSiteDTI: Attention Based Model for Predicting Drug-Target Interaction Using Graph Representati…
  ☆44Updated last year
• Bhattacharya-Lab / EquiPNAS
  pLM-informed E(3) equivariant deep graph neural networks for protein-nucleic acid binding site prediction
  ☆22Updated last year
• HICAI-ZJU / PromptProtein
  Code and Data for the paper: Multi-level Protein Structure Pre-training with Prompt Learning [ICLR 2023]
  ☆33Updated last year
• UniBind / UniBind
  ☆34Updated 2 years ago
• masa-ue / ProDifEvo-Refinement
  Evolutionary Algorithm with Diffusion Models for Protein Design
  ☆24Updated 4 months ago
• ai4protein / ProtSSN
  🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…
  ☆69Updated 2 months ago
• Shen-Lab / CPAC
  [Bioinformatics 2022] Cross-Modality and Self-Supervised Protein Embedding for Compound-Protein Affinity and Contact Prediction
  ☆15Updated last year
• YAndrewL / CLAPE
  contrastive learning and pre-trained encoder for protein-ligand binding sites prediction
  ☆29Updated last week
• EureKaZhu / DiffAffinity
  Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)
  ☆36Updated last year
• OmicsML / awesome-molecule-protein-pretrain-papers
  ☆41Updated last year
• jsunn-y / CARE
  CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes
  ☆34Updated last month