Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)
☆56Dec 9, 2025Updated 7 months ago
Alternatives and similar repositories for PPIformer
Users that are interested in PPIformer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Dataset and package for working with protein-protein interactions in 3D☆108Apr 28, 2025Updated last year
- Highly accurate discovery of terpene synthases powered by machine learning☆17Jun 9, 2026Updated last month
- Environment for developing substructure-aware protein models☆16Mar 26, 2026Updated 4 months ago
- ☆17Jan 5, 2024Updated 2 years ago
- Finding patch of conserved amino acid sites in 3D structure☆14Apr 13, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Curated list on Deep Transformers Applications on Biology and Chemistry☆19Apr 8, 2023Updated 3 years ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆144Nov 11, 2025Updated 8 months ago
- DeepRMSD+Vina is a computational framework that integrates ligand binding pose optimization and screening.☆44Jan 22, 2024Updated 2 years ago
- Metrics to evaluate distributional coverage of generative models of protein structures.☆21Aug 13, 2025Updated 11 months ago
- ☆16Dec 10, 2024Updated last year
- ☆39Aug 28, 2023Updated 2 years ago
- ☆119Dec 7, 2022Updated 3 years ago
- Meta learning addresses noisy and under-labeled data in machine learning-guided antibody engineering (https://doi.org/10.1016/j.cels.2023…☆23Aug 8, 2024Updated last year
- Design a local part of a protein☆20Jan 12, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆12Nov 16, 2023Updated 2 years ago
- ☆249May 15, 2026Updated 2 months ago
- Database of Interacting Protein Structures (DIPS)☆106Jan 26, 2024Updated 2 years ago
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆189Apr 21, 2024Updated 2 years ago
- ☆217Sep 24, 2024Updated last year
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆155Apr 16, 2025Updated last year
- Bayesian Optimization for protein design and mining☆26Jul 2, 2026Updated 3 weeks ago
- Aligning protein generative models with experimental fitness☆124Mar 12, 2026Updated 4 months ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆127May 27, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Mar 22, 2024Updated 2 years ago
- ☆98Updated this week
- Diffusion model based protein-ligand flexible docking method☆120Oct 30, 2024Updated last year
- This repository enables inference and sampling for Dyno Psi-1, a de novo miniprotein binder design model.☆23Mar 24, 2026Updated 4 months ago
- Updated Protpardelle models with more robust motif scaffolding and multichain support☆83May 1, 2026Updated 2 months ago
- One protein is all you need (ICLR 2026)☆115Apr 22, 2026Updated 3 months ago
- Code for "Learning Harmonic Molecular Representations on Riemannian Manifold", ICLR, 2023☆10Mar 23, 2023Updated 3 years ago
- Official repository of "Multi-level Interaction Modeling for Protein Mutational Effect Prediction"☆11Jun 30, 2024Updated 2 years ago
- Directed evolution of proteins in sequence space with gradients☆96Oct 18, 2025Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆74Feb 13, 2026Updated 5 months ago
- Potts model-based protein sequence design☆107Jul 1, 2026Updated 3 weeks ago
- ☆34Jun 9, 2026Updated last month
- Official repository for the Protriever paper☆17Jun 5, 2025Updated last year
- Local Interaction Score (LIS) for structure prediction analysis☆84Updated this week
- Structural Quality Assessment for Biomolecular Structure Prediction Models☆97May 22, 2026Updated 2 months ago
- ☆12Apr 6, 2024Updated 2 years ago