amorehead / alphafold3-pytorch-lightning-hydra
Implementation of AlphaFold 3 in PyTorch Lightning + Hydra
☆34Updated 7 months ago
Alternatives and similar repositories for alphafold3-pytorch-lightning-hydra
Users that are interested in alphafold3-pytorch-lightning-hydra are comparing it to the libraries listed below
Sorting:
- This repository implements Gibbs sampling with Graph-based Smoothing☆38Updated 11 months ago
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆42Updated 5 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆47Updated 5 months ago
- A benchmark for 3D biomolecular structure prediction models☆57Updated this week
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆44Updated 4 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆75Updated 10 months ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆75Updated last year
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆53Updated 9 months ago
- A standardized protein design benchmark for motif-scaffolding problems☆58Updated last week
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆70Updated 6 months ago
- ☆65Updated last year
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆33Updated 5 months ago
- A geometric flow matching model for generative protein-ligand docking and affinity prediction. (ISMB 2025)☆89Updated last month
- Sidechain conditioning and modeling for full-atom protein sequence design☆101Updated 2 months ago
- ☆92Updated 6 months ago
- Aligning protein generative models with experimental fitness☆94Updated 6 months ago
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆27Updated last year
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆59Updated last year
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆54Updated last year
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆90Updated 2 months ago
- Pose checks for 3D Structure-based Drug Design methods☆81Updated 6 months ago
- Official repository of GENzyme☆49Updated 5 months ago
- Structure-conditioned masked language modeling for protein sequence design☆62Updated last year
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆69Updated 4 months ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆121Updated last month
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- 3D equivariant graph transformer for all-atom refinement of protein tertiary structures☆26Updated last year
- Implementation of Protein Invariant Point Packer (PIPPack)☆32Updated 11 months ago
- ☆27Updated 5 months ago
- Codes for our paper "Full-Atom Peptide Design with Geometric Latent Diffusion" (NeurIPS 2024)☆70Updated last month