Yijia-Xiao / Protein-LLM-SurveyLinks
Large Language Models in Protein: A Comprehensive Survey
☆124Updated 5 months ago
Alternatives and similar repositories for Protein-LLM-Survey
Users that are interested in Protein-LLM-Survey are comparing it to the libraries listed below
Sorting:
- Awesome-Biomolecule-Language-Cross-Modeling: a curated list of resources for paper "Leveraging Biomolecule and Natural Language through M…☆223Updated 5 months ago
- A Protein Large Language Model for Multi-Task Protein Language Processing☆193Updated 2 weeks ago
- ☆37Updated 3 months ago
- Scientific Large Language Models: A Survey on Biological & Chemical Domains☆329Updated last week
- OriGene: A Self-Evolving Virtual Disease Biologist for Mechanism-Guided Therapeutic Target Discovery☆150Updated 3 weeks ago
- [COLM'24] We propose Protein Chain of Thought (ProCoT), which replicates the biological mechanism of signaling pathways as language promp …☆66Updated 6 months ago
- [ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts☆98Updated last year
- [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models☆50Updated last year
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆503Updated last month
- Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach☆176Updated 3 months ago
- 🧬 Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)☆135Updated 3 months ago
- RiboNucleic Acid (RNA) Language Model☆126Updated 3 months ago
- A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)☆93Updated 8 months ago
- [ICLR 2024] Mol-Instructions: A Large-Scale Biomolecular Instruction Dataset for Large Language Models☆284Updated 10 months ago
- MSAGPT☆36Updated 9 months ago
- S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure☆68Updated 2 months ago
- ProTrek: Navigating the Protein Universe through Tri-Modal Contrastive Learning☆129Updated last week
- Collection of peptide de novo sequencing algorithms by BEAM labs☆22Updated last week
- ☆79Updated 3 months ago
- Making Protein Modeling Accessible to All Biologists☆118Updated 2 weeks ago
- The first large protein language model trained follows structure instructions.☆84Updated 4 months ago
- BioT5 (EMNLP 2023) and BioT5+ (ACL 2024 Findings)☆117Updated last year
- Code of a structure-enhanced RNA language model named ERBR-RNA (formerly known as ERNIE-RNA)☆21Updated this week
- The Family of Diffusion Protein Language Models (DPLM)☆254Updated last month
- PocketGen (Nature Machine Intelligence 24): Generating Full-Atom Ligand-Binding Protein Pockets☆196Updated 5 months ago
- A Biological Foundation Model Bridging the Gap between Molecular Sequences Through Central Dogma☆27Updated 6 months ago
- [Briefings in Bioinformatics] A Survey of Generative AI for de novo Drug Design☆89Updated 9 months ago
- Nature Methods: RNA foundation model (together with RhoFold)☆303Updated 3 months ago
- 🏭 Easy data acquisition, benchmark resources, PLM fine-tuning for bio-researchers. (ACL Demo 2025)☆150Updated last week
- ☆43Updated last year