Alternatives and similar repositories for Protein-LLM-Survey

Users that are interested in Protein-LLM-Survey are comparing it to the libraries listed below

• QizhiPei / Awesome-Biomolecule-Language-Cross-Modeling
  Awesome-Biomolecule-Language-Cross-Modeling: a curated list of resources for paper "Leveraging Biomolecule and Natural Language through M…
  ☆221Updated 4 months ago
• GENTEL-lab / OriGene
  OriGene: A Self-Evolving Virtual Disease Biologist for Mechanism-Guided Therapeutic Target Discovery
  ☆147Updated this week
• hadi-abdine / Prot2Text
  ☆38Updated 2 months ago
• PKU-YuanGroup / ProLLaMA
  A Protein Large Language Model for Multi-Task Protein Language Processing
  ☆189Updated 3 months ago
• HICAI-ZJU / Scientific-LLM-Survey
  Scientific Large Language Models: A Survey on Biological & Chemical Domains
  ☆326Updated last month
• DeepGraphLearning / ProtST
  [ICML-23 ORAL] ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts
  ☆99Updated last year
• MingyuJ666 / ProLLM
  [COLM'24] We propose Protein Chain of Thought (ProCoT), which replicates the biological mechanism of signaling pathways as language promp…
  ☆67Updated 5 months ago
• ai4protein / ProSST
  🧬 Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)
  ☆131Updated 3 months ago
• terry-r123 / RNABenchmark
  [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models
  ☆49Updated last year
• Eikor / InstructPLM
  The first large protein language model trained follows structure instructions.
  ☆84Updated 3 months ago
• chao1224 / ProteinDT
  A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)
  ☆91Updated 7 months ago
• westlake-repl / SaProt
  Saprot: Protein Language Model with Structural Alphabet (AA+3Di)
  ☆493Updated last week
• duolinwang / S-PLM
  S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure
  ☆69Updated 2 months ago
• QizhiPei / BioT5
  BioT5 (EMNLP 2023) and BioT5+ (ACL 2024 Findings)
  ☆118Updated 11 months ago
• gersteinlab / GenAI4Drug
  [Briefings in Bioinformatics] A Survey of Generative AI for de novo Drug Design
  ☆89Updated 9 months ago
• THUDM / MSAGPT
  MSAGPT
  ☆36Updated 9 months ago
• lbcb-sci / RiNALMo
  RiboNucleic Acid (RNA) Language Model
  ☆122Updated 2 months ago
• programmablebio / ptm-mamba
  ☆79Updated 3 months ago
• westlake-repl / ProTrek
  ProTrek: Navigating the Protein Universe through Tri-Modal Contrastive Learning
  ☆125Updated this week
• zjunlp / Mol-Instructions
  [ICLR 2024] Mol-Instructions: A Large-Scale Biomolecular Instruction Dataset for Large Language Models
  ☆283Updated 10 months ago
• ml4bio / RhoFold
  Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach
  ☆172Updated 3 months ago
• BEAM-Labs / denovo
  Collection of peptide de novo sequencing algorithms by BEAM labs
  ☆22Updated last month
• bytedance / dplm
  The Family of Diffusion Protein Language Models (DPLM)
  ☆247Updated last month
• OATML-Markslab / ProteinGym
  Official repository for the ProteinGym benchmarks
  ☆345Updated last month
• westlake-repl / SaprotHub
  Making Protein Modeling Accessible to All Biologists
  ☆118Updated this week
• OmicsML / awesome-molecule-protein-pretrain-papers
  ☆43Updated last year
• TencentAI4S / CD-GPT
  A Biological Foundation Model Bridging the Gap between Molecular Sequences Through Central Dogma
  ☆27Updated 5 months ago
• A4Bio / ProteinInvBench
  The official implementation of the NeurIPS'23 paper ProteinInvBench: Benchmarking Protein Design on Diverse Tasks, Models, and Metrics
  ☆188Updated 11 months ago
• ai4protein / VenusFactory
  🏭 Easy data acquisition, benchmark resources, PLM fine-tuning for bio-researchers. (ACL Demo 2025)
  ☆138Updated this week
• zaixizhang / PocketGen
  PocketGen (Nature Machine Intelligence 24): Generating Full-Atom Ligand-Binding Protein Pockets
  ☆196Updated 4 months ago