huang-sh / scmcpLinks
MCP server for single cell analysis
☆12Updated 6 months ago
Alternatives and similar repositories for scmcp
Users that are interested in scmcp are comparing it to the libraries listed below
Sorting:
- Gene group activity utility functions for Scanpy☆97Updated 11 months ago
- Single cell omics biology annotations☆50Updated 7 months ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆79Updated 7 months ago
- ☆47Updated last month
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics☆56Updated 5 months ago
- Predict RNA velocity through deep learning☆70Updated last year
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆64Updated 3 years ago
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆61Updated last month
- Accurate and fast cell marker gene identification with COSG☆53Updated last month
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆67Updated 3 weeks ago
- ☆13Updated 7 years ago
- Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data☆20Updated this week
- ☆45Updated last year
- A unified interface to spatial transcriptomics deconvolution tools☆45Updated 2 weeks ago
- Spatial transcriptomics of heart tissue☆101Updated 2 years ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆78Updated 4 months ago
- R implementation of GeneTrajectory☆65Updated last year
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆57Updated last week
- Aligning gene expression trajectories of single-cell reference and query systems☆77Updated 3 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 11 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆91Updated 6 months ago
- ☆60Updated last year
- ☆44Updated last year
- HCC single cell analysis for Alvarez, Benhammou et al.☆17Updated 3 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 4 years ago
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆20Updated 7 months ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆81Updated 3 years ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆81Updated 8 months ago
- ☆78Updated last year