MCP server for single cell analysis
☆12May 15, 2025Updated last year
Alternatives and similar repositories for scmcp
Users that are interested in scmcp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Gain biological insights using LLM.☆15Jan 26, 2026Updated 4 months ago
- Manipulate KEGG networks as NetworkX objects in in Python☆10Jan 21, 2022Updated 4 years ago
- Scripts to reproduce the analysis of the MAESTER paper (https://www.nature.com/articles/s41587-022-01210-8).☆13May 18, 2024Updated 2 years ago
- AI workflow (base on gpt-image-2 and paddle ocr v5) for generating PPT decks from papers, PDFs, figures, screenshots, and prepared materi…☆161May 15, 2026Updated 2 weeks ago
- 基于 [awesome-ai-research-writing](https://github.com/Leey21/awesome-ai-research-writing) 的 Web 界面，提供论文写作辅助功能。☆89Mar 10, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Graph algorithms based on the Rust "petgraph" library.☆32Jul 12, 2025Updated 10 months ago
- ☆25Jan 9, 2024Updated 2 years ago
- ☆12May 14, 2026Updated 2 weeks ago
- A specialized LLM for study search, study screening, and data extraction from medical literature.☆30May 12, 2026Updated 2 weeks ago
- ☆31Sep 20, 2025Updated 8 months ago
- R package that contains plink binaries for windows, mac and linux☆16Oct 14, 2019Updated 6 years ago
- [EMNLP 2025] Med-PRM: Medical Reasoning Models with Stepwise, Guideline-verified Process Rewards☆67Sep 15, 2025Updated 8 months ago
- Analysis of Multivariate Event Times https://kkholst.github.io/mets/☆14Updated this week
- Tutorials for Squidpy☆34Dec 18, 2025Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆14Mar 11, 2022Updated 4 years ago
- Codes for our NPNT paper at Nature Metabolism☆16Feb 9, 2024Updated 2 years ago
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- Downstream analysis for the paper "Metabolomic profiles predict individual multi-disease outcomes in the UK Biobank cohort".☆15Sep 27, 2025Updated 8 months ago
- ☆11Feb 22, 2023Updated 3 years ago
- Ultrafast method to compute single-sample gene set enrichment scores for gene expression or proteomics data☆24May 2, 2026Updated 3 weeks ago
- Dynamic Multivariate Data Analysis and Visualization Platform☆41Nov 8, 2015Updated 10 years ago
- IAN: An Intelligent System for Omics Data Analysis and Discovery☆10Feb 23, 2026Updated 3 months ago
- ☆17May 22, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A repository for the lessons and notebooks used for Binder tutorials☆16Oct 24, 2020Updated 5 years ago
- GUARDRAIL - MCP Security - Gateway for Unified Access, Resource Delegation, and Risk-Attenuating Information Limits☆17Jul 21, 2025Updated 10 months ago
- Automatic selection of number of principal components☆17Jun 27, 2022Updated 3 years ago
- ☆29Oct 22, 2024Updated last year
- Functions to Create Publication-Quality Plots☆17Jan 21, 2026Updated 4 months ago
- scEntropy method and scEGMM framework☆18Oct 26, 2019Updated 6 years ago
- Awesome-AI-Meets-Biology is a collection of state-of-the-art, novel, exciting LLMs and agents on biomedical and bioinformatic fields.☆33Updated this week
- ☆13Sep 2, 2024Updated last year
- ☆10Dec 4, 2023Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A portable and fast single cell type identifier☆64May 12, 2021Updated 5 years ago
- 🔍 Enable AI assistants to search and access ClinicalTrials.gov data through a simple MCP interface.☆16Apr 9, 2025Updated last year
- Simple scVI implementation☆13May 18, 2026Updated last week
- Automatically annotate cell types, consistently across samples.☆21May 18, 2026Updated last week
- A comprehensive Model Context Protocol (MCP) server for accessing the PubChem chemical database. This server provides access to over 110 …☆37Dec 21, 2025Updated 5 months ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆39Jul 11, 2025Updated 10 months ago
- SCALLOP-INF analysis☆20Oct 24, 2025Updated 7 months ago