huang-sh / scmcpLinks
MCP server for single cell analysis
☆12Updated 7 months ago
Alternatives and similar repositories for scmcp
Users that are interested in scmcp are comparing it to the libraries listed below
Sorting:
- Single cell omics biology annotations☆51Updated 8 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆67Updated last month
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆79Updated 7 months ago
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics☆56Updated 6 months ago
- R implementation of GeneTrajectory☆68Updated last year
- ☆48Updated last month
- This repository contains all code used for the Human Lung Cell Atlas project.☆57Updated 2 years ago
- Gene group activity utility functions for Scanpy☆99Updated 11 months ago
- Accurate and fast cell marker gene identification with COSG☆53Updated 2 months ago
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆45Updated 4 months ago
- UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data☆26Updated 2 years ago
- Python implementation of Milo for differential abundance testing on KNN graph☆77Updated 10 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆57Updated 3 weeks ago
- Spatial direct messaging detected by bivariate Moran☆31Updated 5 months ago
- Predict RNA velocity through deep learning☆71Updated 2 years ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆81Updated 9 months ago
- Additional code and analysis from the single-cell integration benchmarking project☆69Updated 3 years ago
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆36Updated this week
- A unified interface to spatial transcriptomics deconvolution tools☆45Updated last month
- Spatial transcriptomics of heart tissue☆103Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆80Updated 4 months ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆64Updated 3 years ago
- ☆60Updated 3 months ago
- ☆119Updated 6 months ago
- ☆14Updated 6 months ago
- ☆65Updated 2 years ago
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆20Updated 8 months ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆47Updated 4 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆91Updated 6 months ago