segrelabgenomics / TwoSampleMR_pipelineLinks
Pipeline that runs two-sample Mendelian randomization on molecular QTLs and GWAS loci and tests for horizontal pleiotropy.
☆26Updated 2 years ago
Alternatives and similar repositories for TwoSampleMR_pipeline
Users that are interested in TwoSampleMR_pipeline are comparing it to the libraries listed below
Sorting:
- ☆22Updated 3 years ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆26Updated 3 years ago
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆36Updated last year
- xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs☆37Updated 10 months ago
- Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data☆22Updated last month
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆18Updated 5 years ago
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆35Updated 6 months ago
- Pseudotime Analysis for Bulk Data☆18Updated last year
- Tissue-Gene Fine-Mapping☆26Updated 8 months ago
- R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.☆17Updated 4 years ago
- ☆15Updated 4 years ago
- Pan cancer summary statistics from meta analyses of UK Biobank and Kaiser GERA cohorts.☆17Updated 5 years ago
- ☆18Updated 2 years ago
- ☆15Updated 2 years ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆17Updated 2 years ago
- ☆16Updated 2 years ago
- Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆31Updated last week
- identifying disease critical cell types and programs from single cell RNAseq☆57Updated 3 years ago
- ☆16Updated 4 years ago
- Perform cell-stratified MR analysis through integrating GWAS and QTL data☆34Updated 4 months ago
- Enrichment Networks for Pathway Enrichment Analysis☆63Updated 2 years ago
- Create Regional Association Plots☆12Updated 3 months ago
- Assessing enrichment of complex disease or trait associations among QTLs☆15Updated 5 years ago
- ☆22Updated 2 years ago
- Kidney Epigenome and Transcriptome-based multi-stage Prioritization☆17Updated 3 years ago
- ☆17Updated 2 years ago
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Updated 5 years ago
- The source code of web server TIP, including example data.☆20Updated 6 years ago
- Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"☆26Updated 4 years ago
- GWAS genetics Fine-mapping method☆26Updated last year