combining p-values using modified stouffer-liptak for spatially correlated results (probes)
☆46Mar 18, 2022Updated 3 years ago
Alternatives and similar repositories for combined-pvalues
Users that are interested in combined-pvalues are comparing it to the libraries listed below
Sorting:
- A utility to map bisulfite sequencing data to the Illumina 450K methylation CpG set☆18Feb 12, 2016Updated 10 years ago
- Genetic Association Analysis Under Complex Survey Sampling☆13Nov 13, 2019Updated 6 years ago
- Relevant papers for CNV and SV approaches☆94Nov 5, 2024Updated last year
- A 450k tutorial in the form of an R package☆12Jul 5, 2016Updated 9 years ago
- Assemble the Genome in a Bottle sequencing data☆10Aug 4, 2017Updated 8 years ago
- A cross-package Bioconductor workflow for analysing methylation array data☆11Mar 31, 2017Updated 8 years ago
- A simple and performant API for working with many genomic file formats in a consistent fashion☆16Mar 23, 2018Updated 7 years ago
- ChIP-seq peak calling with GC effects adjustment☆10Jul 5, 2018Updated 7 years ago
- Python package to analyze DNA methylation data☆45Feb 17, 2026Updated 2 weeks ago
- ☆24Dec 17, 2020Updated 5 years ago
- ☆25May 15, 2019Updated 6 years ago
- A collection of functions for working with DNA methylation microarrays (quality control, pre-processing, LC estimation, ...)☆27Jul 28, 2025Updated 7 months ago
- An extensible Ruby on Rails web-service application and database for visualising HTGS data☆18Mar 7, 2014Updated 11 years ago
- TFFM framework☆13Sep 22, 2025Updated 5 months ago
- Python library to parse file formats related to Illumina bead arrays☆48Jan 30, 2025Updated last year
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Oct 2, 2014Updated 11 years ago
- ☆14Aug 30, 2025Updated 6 months ago
- vcf file manipulation☆22Jul 9, 2015Updated 10 years ago
- A toolbox for sparse contrastive principal component analysis☆12Feb 10, 2025Updated last year
- Mitochondrial Solar Plot☆25Feb 25, 2017Updated 9 years ago
- Collection of scripts for working with Wiggle files and analyzing sequencing data☆17Feb 9, 2019Updated 7 years ago
- Jupyter notebook repository for reproducing analysis in "DNA Methylation Landscape of the Mouse Brain at Single-Cell Resolution"☆14Apr 1, 2020Updated 5 years ago
- BigWig manpulation tools using libBigWig and htslib☆30Aug 8, 2024Updated last year
- conda recipes for genomic data☆84Jul 31, 2021Updated 4 years ago
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆159Aug 8, 2025Updated 6 months ago
- A repository of real-world data challenges faced by organizations used for project-based learning☆18Jun 1, 2015Updated 10 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Jun 28, 2018Updated 7 years ago
- Devel repository for bsseq☆39Feb 6, 2026Updated last month
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆38Sep 24, 2021Updated 4 years ago
- TOP results by CONfident efFECT Sizes.☆15Dec 9, 2024Updated last year
- Main site for DSSG Training 2015☆10Jul 29, 2015Updated 10 years ago
- BISulfite-seq CUI Toolkit☆70Oct 9, 2025Updated 4 months ago
- Repository for signature genes from Immune Cell Atlas☆19Sep 25, 2019Updated 6 years ago
- Read HOMER motif analysis output in R.☆17Mar 1, 2018Updated 8 years ago
- Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria☆19Jul 29, 2013Updated 12 years ago
- Python-based Illumina methylation array analysis software☆16Jan 25, 2024Updated 2 years ago
- A tool to implement Genomic Prediction Experiments using Deep Learning☆17Mar 24, 2023Updated 2 years ago
- ☆14May 12, 2023Updated 2 years ago
- Differential methylation: Easy, Fast, Identification and ANnoTation☆19Dec 18, 2020Updated 5 years ago