Alternatives and similar repositories for argyle

Users that are interested in argyle are comparing it to the libraries listed below

• sritchie73 / liftOverPlink
  A wrapper for liftOver for converting plink genotype data between different genome reference builds
  ☆51Updated 6 years ago
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆39Updated 3 years ago
• mani2012 / BatchQC
  Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.
  ☆35Updated 2 years ago
• bartongroup / RATS
  Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
  ☆34Updated 3 years ago
• thelovelab / tximeta
  Transcript quantification import with automatic metadata detection
  ☆67Updated last week
• Shians / Glimma
  Glimma R package
  ☆50Updated last year
• statgen / locuszoom-standalone
  Create regional association plots from GWAS or meta-analysis
  ☆61Updated 5 years ago
• brentp / combined-pvalues
  combining p-values using modified stouffer-liptak for spatially correlated results (probes)
  ☆46Updated 3 years ago
• mkanai / fujiplot
  Fuji plot—a circos representation of multiple GWAS results—
  ☆91Updated 4 months ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆29Updated last year
• PhanstielLab / Sushi
  Tools for visualizing genomics data
  ☆69Updated 3 years ago
• kdkorthauer / dmrseq
  R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing
  ☆61Updated 4 months ago
• nuno-agostinho / psichomics
  Interactive R package to quantify, analyse and visualise alternative splicing
  ☆37Updated this week
• gagneurlab / OUTRIDER
  OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data
  ☆54Updated 2 months ago
• PhanstielLab / bedtoolsr
  R package wrapping bedtools
  ☆44Updated 6 months ago
• joepickrell / fgwas
  Functional genomics and genome-wide association studies
  ☆67Updated 7 years ago
• gersteinlab / exceRpt
  Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets
  ☆23Updated 2 years ago
• hansenlab / minfi
  Devel repository for minfi
  ☆60Updated last year
• CompEpigen / methrix
  An R for fast and flexible DNA methylation analysis
  ☆34Updated this week
• UMMS-Biocore / debrowser
  Differential Count Data Analysis Toolbox
  ☆61Updated last year
• lpantano / DEGreport
  Create a cromphensive report of DEG list coming from any analysis of RNAseq data
  ☆26Updated last year
• jtleek / sva-devel
  ☆29Updated last year
• BIMSBbioinfo / genomation
  R package for genomic feature analysis and visualization
  ☆79Updated 5 months ago
• gabraham / plink2R
  Read PLINK BED/BIM/FAM files into R
  ☆41Updated 4 years ago
• kgori / sigfit
  Flexible Bayesian inference of mutational signatures
  ☆36Updated 2 years ago
• ge11232002 / TFBSTools
  Software Package for Transcription Factor Binding Site (TFBS) Analysis
  ☆30Updated 6 months ago
• hanchenphd / GMMAT
  Generalized linear Mixed Model Association Tests
  ☆44Updated last year
• n-mounier / bGWAS
  R package to perform Bayesian Genome-Wide Association Studies
  ☆41Updated last year
• ilarsf / gwasTools
  Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
  ☆32Updated 4 months ago
• G3viz / g3viz
  Lollipop-diagram to interactively visualize genetic mutations
  ☆33Updated last year