andrewparkermorgan / argyleLinks
An R package for import, QC and analysis of Illumina Infinium genotyping arrays
☆35Updated 7 years ago
Alternatives and similar repositories for argyle
Users that are interested in argyle are comparing it to the libraries listed below
Sorting:
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆51Updated 6 years ago
- Read PLINK BED/BIM/FAM files into R☆41Updated 4 years ago
- Create regional association plots from GWAS or meta-analysis☆61Updated 5 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- A small R package to make sequencing read coverage plots in R.☆39Updated 3 years ago
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆61Updated 3 months ago
- Transcript quantification import with automatic metadata detection☆68Updated last month
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆25Updated last year
- An R for fast and flexible DNA methylation analysis☆33Updated last month
- Flexible Bayesian inference of mutational signatures☆36Updated 2 years ago
- Fuji plot—a circos representation of multiple GWAS results—☆88Updated 2 months ago
- Generalized linear Mixed Model Association Tests☆42Updated last year
- Glimma R package☆50Updated 11 months ago
- R package for genomic feature analysis and visualization☆79Updated 4 months ago
- Get SNP proxies from the 1000 Genomes Project.☆28Updated 6 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆53Updated 3 weeks ago
- R package for quality control of plink genetic datasets☆59Updated last month
- ☆30Updated 4 years ago
- Tools for visualizing genomics data☆69Updated 3 years ago
- R package to perform Bayesian Genome-Wide Association Studies☆40Updated last year
- Functional genomics and genome-wide association studies☆67Updated 7 years ago
- Genomic plot in trellis layout☆41Updated last year
- R package wrapping bedtools☆42Updated 5 months ago
- Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets☆23Updated 2 years ago
- Main ricopili repo for public releases☆49Updated 4 months ago
- This github repository contains code to reproduce the analysis in our paper "Variability in estimated gene expression among commonly used…☆28Updated last year
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- Differential expression and allelic analysis, nonparametric statistics☆29Updated 7 months ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 5 months ago