An R package for import, QC and analysis of Illumina Infinium genotyping arrays
☆35Mar 20, 2018Updated 8 years ago
Alternatives and similar repositories for argyle
Users that are interested in argyle are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- processing illumina SNP arrays☆20Feb 3, 2017Updated 9 years ago
- ☆13Feb 10, 2021Updated 5 years ago
- Scripts for generating integrated dataset from publically available data sources to evaluate known genetic associations evidence of varyi…☆11May 5, 2020Updated 6 years ago
- R packages☆13Aug 6, 2026Updated last month
- Population Assignment using Genetic, Non-genetic or Integrated Data in a Machine-learning Framework. Methods in Ecology and Evolution.…☆16Sep 12, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL/CHP files to VCF☆165Feb 26, 2026Updated 6 months ago
- Implementation of a polymorphism aware phylogenetic model using HYPHY☆19Jan 14, 2022Updated 4 years ago
- an open-source pipeline for Affymetrix Axiom genotyping workflow on livestock species☆15Jul 22, 2016Updated 10 years ago
- GEO RNA-seq Experiments Processing Pipeline☆23Oct 25, 2019Updated 6 years ago
- ☆15Nov 9, 2018Updated 7 years ago
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆54Feb 1, 2019Updated 7 years ago
- Python library to parse file formats related to Illumina bead arrays☆50Jan 30, 2025Updated last year
- ☆60May 12, 2021Updated 5 years ago
- Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)☆45Oct 24, 2019Updated 6 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- From IDAT to beta.☆25Jul 13, 2018Updated 8 years ago
- Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria☆19Jul 29, 2013Updated 13 years ago
- A Weighted Exact Test for Mutually Exclusive Mutations in Cancer☆20Sep 30, 2018Updated 7 years ago
- eqtl analysis pipeline using tensorqtl, saige-qtl, LIMIX, quasar and jaxQTL☆18Feb 3, 2026Updated 7 months ago
- QTL analysis in diallel populations☆13Mar 13, 2026Updated 6 months ago
- Experimental EIGENSOFT performance improvements.☆22Nov 1, 2014Updated 11 years ago
- R package for testing and visualizing gene list overlaps☆20Aug 22, 2016Updated 10 years ago
- FELLA: an R package for Metabolomics data enrichment through diffusion☆25Jan 23, 2026Updated 8 months ago
- Impute to 1000 genomes efficiently by distributing to SGE, including alignment of target to reference, haplotyping, imputing, converting …☆14May 28, 2014Updated 12 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Statistical GENetics Input/Output Functions☆19Feb 20, 2025Updated last year
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆29Aug 2, 2022Updated 4 years ago
- A short tutorial on using R + markdown☆19Sep 30, 2020Updated 5 years ago
- Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool☆184Mar 11, 2026Updated 6 months ago
- We design a method for heritability estimation, namely LD Eigenvalue Regression (LDER), which extends the LDSC method and provides more a…☆13Aug 20, 2025Updated last year
- [Under development] Random classification and regression trees☆19Oct 11, 2015Updated 10 years ago
- Colocalisation pipeline for Open Targets Genetics☆18May 11, 2026Updated 4 months ago
- A set of tools for modelling ancestry patterns along the genome.☆24Aug 26, 2026Updated 3 weeks ago
- Converts bam or cram files to fastq format and does quality control.☆32Sep 14, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Super high performance interactive heatmap software☆32Nov 19, 2018Updated 7 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆36Sep 14, 2026Updated last week
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆41Dec 11, 2018Updated 7 years ago
- Automatically exported from code.google.com/p/macs☆17Oct 17, 2019Updated 6 years ago
- Source code for ScanGEO Shiny App☆15Apr 18, 2022Updated 4 years ago
- A suite of tools for processing genotype data. Includes calling genotypes from .idat to plink (ped), sample/case-control variant QC steps…☆15Feb 5, 2026Updated 7 months ago
- Report reverse and ambiguous strand SNPs in GWAS data☆34May 15, 2019Updated 7 years ago