KHP-Informatics / illumina-array-protocolsLinks
processing illumina SNP arrays
☆19Updated 8 years ago
Alternatives and similar repositories for illumina-array-protocols
Users that are interested in illumina-array-protocols are comparing it to the libraries listed below
Sorting:
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆72Updated last year
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 4 years ago
- QDNAseq package for Bioconductor☆52Updated last year
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- ☆53Updated 2 years ago
- CNV screening and annotation tool☆25Updated 8 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 10 years ago
- ☆78Updated 11 years ago
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆74Updated 3 months ago
- Burden testing against public controls☆50Updated last year
- WisecondorX — An evolved WISECONDOR☆105Updated last month
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated last year
- Report reverse and ambiguous strand SNPs in GWAS data☆33Updated 6 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆70Updated 3 years ago
- BISulfite-seq CUI Toolkit☆67Updated this week
- CN-Learn☆30Updated 5 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 4 years ago
- Relevant papers for CNV and SV approaches☆94Updated 11 months ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆72Updated 7 years ago
- Script to convert GTC/BPM files to VCF☆47Updated last year
- My bioinfo toolbox☆50Updated 8 months ago
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆56Updated 5 years ago
- Allele-specific alignment sorting☆59Updated 2 years ago
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- BAM Statistics, Feature Counting and Annotation☆150Updated last week