Computation of Unifrac using Earth Movers Distance
☆10Jun 20, 2022Updated 4 years ago
Alternatives and similar repositories for EMDUnifrac
Users that are interested in EMDUnifrac are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 3 years ago
- Implementation of CoNet in R☆16Oct 16, 2019Updated 7 years ago
- Python package simulating artificial selection on microbial communities☆15Aug 15, 2023Updated 3 years ago
- Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models☆13Nov 28, 2023Updated 2 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Mar 8, 2023Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆21Mar 15, 2023Updated 3 years ago
- Scripts required to calculate tetramer frequencies and create input files for ESOM. See: Dick, G.J., A. Andersson, B.J. Baker, S.S. Simmo…☆17Feb 17, 2022Updated 4 years ago
- microbiome data simulation package☆22Oct 2, 2025Updated last year
- Quality control plotting for long reads☆10May 14, 2024Updated 2 years ago
- re-assembly and analysis of the Marine Microbial Eukaryotic Transcriptome Sequencing Project☆14Sep 18, 2018Updated 8 years ago
- Delve deeper into using R and vegan to analyse complex multivariate community ecology data with this free webinar☆21Jul 9, 2020Updated 6 years ago
- A Teaching Engine for Genomics☆12Mar 21, 2021Updated 5 years ago
- Tools for extracting individual genomes from metagenomes☆16Dec 4, 2023Updated 2 years ago
- ROCC: Reinforcement learning for the Optimisation of Co-Cultures☆13Nov 17, 2020Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Automatically calculate phylogenetic trees from bacterial core genes☆21May 28, 2026Updated 4 months ago
- Python interface for running COMETS simulations and analyzing the results☆15May 19, 2026Updated 5 months ago
- ☆15Aug 6, 2020Updated 6 years ago
- Higher-Order Co-occurrence☆12Nov 9, 2021Updated 4 years ago
- ☆19Nov 2, 2018Updated 7 years ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆19Feb 5, 2022Updated 4 years ago
- GEMsembler tool for assembling and comparing several types of Genome-Scale Metabolic Models (GEMs)☆14Jun 29, 2026Updated 3 months ago
- ☆10Jul 4, 2019Updated 7 years ago
- A 'time'-like utility for Unix that measures peak memory usage☆18Jun 5, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Automated synthetic microbial Community Design☆13Mar 26, 2021Updated 5 years ago
- Compositional Lotka-Volterra☆16May 31, 2024Updated 2 years ago
- ☆16Jun 30, 2024Updated 2 years ago
- Python package for creating, calibrating and simulating RBA models☆14Aug 19, 2026Updated 2 months ago
- Executable files for usearch versions 5 through 11, donated to the public domain☆24Jun 15, 2024Updated 2 years ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31May 25, 2021Updated 5 years ago
- Pathway Tools multiprocessing wrapper (for PathoLogic).☆16Sep 18, 2026Updated last month
- DNA/RNA pattern matching algorithm☆21Aug 9, 2025Updated last year
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆50Sep 30, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- PaperBLAST: find papers about a protein or its homologs☆55Sep 8, 2026Updated last month
- Tools developed in Python and Perl to support TCDB's functionality and research.☆12Aug 19, 2023Updated 3 years ago
- Compressed, associative, and exact hash table for k-mers☆11Updated this week
- The 3rd incarnation of the Wise package for sequence analysis☆23Jun 19, 2014Updated 12 years ago
- Metagenomics Workshop☆27Nov 23, 2016Updated 9 years ago
- MUSiCC: A marker genes based framework for metagenomic normalization and accurate profiling of gene abundances in the microbiome☆18Nov 7, 2019Updated 6 years ago
- A skill that helps you get a peer review on your manuscripts in preparation. Upload a manuscript (or paste an abstract), and it runs targ…☆53Jun 30, 2026Updated 3 months ago