griffithlab / convert_zero_one_based
Python CLI to convert between zero and one based genomic coordinate systems
☆21Updated 6 years ago
Related projects: ⓘ
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆40Updated 2 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 5 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- ☆32Updated 5 years ago
- Flexible Bayesian inference of mutational signatures☆33Updated last year
- Convert RNA-STAR aligner "SJ.out.tab" files to "Percent spliced-in" (Psi) scores☆9Updated 9 years ago
- Filters for false-positive mutation calls in NGS☆30Updated 5 years ago
- DriverPower☆25Updated 3 months ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 5 years ago
- a set of NGS pipelines☆24Updated 2 weeks ago
- Genomic data interpretation and visualization Workshop☆17Updated last year
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆20Updated 2 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 6 years ago
- Git repo for CONIPHER tree building☆17Updated this week
- Differential ATAC-seq toolkit☆27Updated 9 months ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆22Updated last year
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆43Updated 2 years ago
- Tool for RNA-Seq analysis.☆38Updated 2 years ago
- ☆23Updated 5 months ago
- A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample☆31Updated last year
- How to use CENTIPEDE to determine if a transcription factor is bound.☆25Updated 6 years ago
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆27Updated 9 years ago
- Useful tools for working with Salmon output☆36Updated 4 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆35Updated this week
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆32Updated 6 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- processes GoT amplicon data and generates a table of metrics☆26Updated 2 years ago
- Merge fastq files split over lanes☆18Updated 6 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆37Updated 3 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆29Updated 6 years ago