griffithlab / convert_zero_one_basedLinks
Python CLI to convert between zero and one based genomic coordinate systems
☆23Updated 7 years ago
Alternatives and similar repositories for convert_zero_one_based
Users that are interested in convert_zero_one_based are comparing it to the libraries listed below
Sorting:
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- Python module and utility programs for working with GFF files☆33Updated 5 years ago
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆50Updated last year
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- JAMM Peak Finder for Sequencing Datasets☆30Updated 5 years ago
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Updated last year
- The SomaticSignatures package offers the framework for identifying mutational signatures of single nucleotide variants (SNVs) from high-t…☆22Updated 5 years ago
- ☆33Updated 3 years ago
- Fast fusion detection using kallisto☆79Updated 7 months ago
- Genomic data interpretation and visualization Workshop☆21Updated 2 months ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆32Updated 3 years ago
- A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample☆33Updated 2 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆55Updated 2 months ago
- SeqMonk NGS visualisation and analysis tool☆50Updated 2 months ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 3 years ago
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆56Updated 4 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- DriverPower☆26Updated last year
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- ☆35Updated 5 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆38Updated 5 years ago
- Tool for RNA-Seq analysis.☆39Updated 3 years ago
- Create regional association plots from GWAS or meta-analysis☆61Updated 5 years ago