griffithlab / convert_zero_one_based
Python CLI to convert between zero and one based genomic coordinate systems
☆22Updated 6 years ago
Alternatives and similar repositories for convert_zero_one_based:
Users that are interested in convert_zero_one_based are comparing it to the libraries listed below
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- Merge fastq files split over lanes☆20Updated 7 years ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated 11 months ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- Genomic data interpretation and visualization Workshop☆19Updated last year
- Interactive R package to quantify, analyse and visualise alternative splicing☆36Updated last month
- The SomaticSignatures package offers the framework for identifying mutational signatures of single nucleotide variants (SNVs) from high-t…☆22Updated 4 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 5 months ago
- a Shiny/R application to view and annotate copy number variations☆28Updated last year
- Filters for false-positive mutation calls in NGS☆30Updated 5 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 6 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 4 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample☆31Updated last year
- DriverPower☆26Updated last month
- Flexible Bayesian inference of mutational signatures☆34Updated 2 years ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated 4 months ago
- Python module and utility programs for working with GFF files☆32Updated 4 years ago
- combining p-values using modified stouffer-liptak for spatially correlated results (probes)☆44Updated 2 years ago
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆28Updated 2 weeks ago
- processes GoT amplicon data and generates a table of metrics☆28Updated 2 years ago
- ☆29Updated 5 years ago
- Make rapid visualizations of RNA-seq data in R☆19Updated 5 years ago
- Genomic Association Tester☆30Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 6 months ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- Fast RNAseq pipeline☆10Updated last year