Alternatives and similar repositories for bioawk-tutorial

Users that are interested in bioawk-tutorial are comparing it to the libraries listed below

• sujaikumar / assemblage
  Tools for working with second gen assemblies, fasta sequences, etc
  ☆93Updated 8 years ago
• arq5x / bedtools-protocols
  ☆78Updated 11 years ago
• 10XGenomics / supernova
  10x Genomics Linked-Read Diploid De Novo Assembler
  ☆65Updated 6 years ago
• enormandeau / gawn
  Genome Annotation Without Nightmares
  ☆45Updated 4 months ago
• NBISweden / pipelines-nextflow
  A set of workflows written in Nextflow for Genome Annotation.
  ☆45Updated 11 months ago
• Oshlack / Lace
  Building SuperTranscripts: A linear representation of transcriptome data
  ☆67Updated 4 years ago
• MerrimanLab / selectionTools
  Pipeline to take VCF through to Selection Analysis.
  ☆58Updated 2 years ago
• z0on / GO_MWU
  Rank-based Gene Ontology analysis of gene expression data
  ☆42Updated 2 years ago
• frankMusacchia / Annocript
  Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …
  ☆55Updated 5 years ago
• GenomicsCoreLeuven / GBSX
  GBSX: a toolkit for experimental design and demultiplexing genotyping by sequencing experiments
  ☆18Updated 8 years ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆97Updated last year
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆86Updated 3 years ago
• wdecoster / nano-snakemake
  A snakemake pipeline for SV analysis from nanopore genome sequencing
  ☆51Updated 5 years ago
• Trinotate / Trinotate.github.io
  web documentation for Trinotate
  ☆48Updated 2 years ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆74Updated 4 years ago
• Oshlack / Corset
  Software for clustering de novo assembled transcripts and counting overlapping reads
  ☆71Updated 3 years ago
• andrewkern / popGenMachineLearningExamples
  simple examples of using supervised machine learning for population genetics inference
  ☆38Updated 7 years ago
• MikkelSchubert / paleomix
  Pipelines and tools for the processing of ancient and modern HTS data.
  ☆47Updated this week
• dentearl / mafTools
  Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.
  ☆107Updated 2 years ago
• hyphaltip / genome-scripts
  Genome Scripts used in fungal comparative genomics
  ☆66Updated 4 years ago
• rjchallis / assembly-stats
  Assembly statistic visualisation
  ☆90Updated last year
• szpiech / selscan
  Haplotype based scans for selection
  ☆130Updated last month
• harvardinformatics / TranscriptomeAssemblyTools
  A collection of scripts for processing fastq files in ways to improve de novo transcriptome assemblies, and for evaluating those assembli…
  ☆50Updated last year
• rhysf / Synima
  Synteny Imager
  ☆62Updated 9 months ago
• voichek / kmersGWAS
  A library for running k-mers based GWAS
  ☆109Updated 7 months ago
• fbreitwieser / bamcov
  Quickly calculate and visualize sequence coverage in alignment files
  ☆99Updated 5 years ago
• lh3 / bfc
  High-performance error correction for Illumina resequencing data
  ☆71Updated 9 years ago
• Magdoll / Cogent
  Coding Genome Reconstruction using Iso-Seq data
  ☆61Updated 3 years ago
• davidebolo1993 / NanoR
  Nanopore data analysis in R
  ☆40Updated last year
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆99Updated last week