jertubiana / PGMLinks
Probabilistic Graphical Models in Python3.
☆25Updated 7 months ago
Alternatives and similar repositories for PGM
Users that are interested in PGM are comparing it to the libraries listed below
Sorting:
- ☆18Updated 8 years ago
- ☆110Updated 3 years ago
- ☆32Updated 4 months ago
- TEINet: a deep learning framework for prediction of TCR-epitope binding specificity☆16Updated 2 years ago
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Updated 7 years ago
- Learning with uncertainty for biological discovery and design☆34Updated 2 years ago
- Paratope Prediction using Deep Learning☆61Updated 2 years ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆71Updated last year
- An introductory workshop to protein language models☆17Updated 3 years ago
- Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp …☆22Updated 2 years ago
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆41Updated 2 years ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 5 years ago
- Code for our paper "Protein sequence design with a learned potential"☆34Updated 4 years ago
- Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.☆60Updated 4 years ago
- Fast and accurate protein structure prediction☆57Updated last year
- mGPfusion is a Gaussian process based method for predicting stability changes upon single and multiple mutations of proteins that comple…☆15Updated 7 years ago
- Protein design and variant prediction using autoregressive generative models☆24Updated 2 years ago
- SPECTRA: Spectral framework for evaluation of biomedical AI models☆41Updated 10 months ago
- Drug Discovery under Covariate Shift with Domain-Informed Prior Distributions over Functions☆24Updated 2 years ago
- Implementation of "Generative Modeling for Protein Structures" by Namrata Anand and Po-Ssu Huang☆19Updated 4 years ago
- Reimplementation of the UniRep protein featurization model.☆108Updated last year
- ☆37Updated 2 years ago
- Code used in the manuscript for De Novo Design of Bioactive Protein Switches☆16Updated 6 years ago
- ☆16Updated 5 months ago
- PDNET: A fully open-source framework for deep learning protein real-valued distances☆36Updated 4 years ago
- Autoregressive networks for protein☆38Updated 11 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆26Updated last year
- ☆36Updated 6 years ago
- Machine learning models for antibody sequences in PyTorch☆41Updated 4 years ago