SARS-CoV-2 genomics
☆16Jun 20, 2025Updated 8 months ago
Alternatives and similar repositories for HCoV-19-Genomics
Users that are interested in HCoV-19-Genomics are comparing it to the libraries listed below
Sorting:
- Divide and Conquer BLAST: using grid engines to accelerate NCBI-BLAST+ and other sequence analysis tools☆11Apr 26, 2020Updated 5 years ago
- Documentation for analyzing SARS-Cov2 samples.☆12Jun 4, 2020Updated 5 years ago
- ☆13Dec 15, 2025Updated 2 months ago
- VarSkip multiplex PCR designs for SARS-CoV-2 sequencing☆14Jun 14, 2022Updated 3 years ago
- ☆20Apr 2, 2025Updated 11 months ago
- INNUENDO quality control of reads, de novo assembly and contigs quality assessment, and possible contamination search☆15Dec 14, 2022Updated 3 years ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆38Jan 22, 2026Updated last month
- Mostly useful scripts and files for processing MiSeq amplicon data☆18Jul 1, 2016Updated 9 years ago
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated 9 months ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆49Feb 26, 2026Updated last week
- Repository containing a method for automatically identifying pathogen lineages from a phylogeny.☆17May 19, 2023Updated 2 years ago
- Depth-weighted De-Mixing☆127Updated this week
- ☆19Apr 9, 2021Updated 4 years ago
- A simple nextflow pipeline for running kraken2 and bracken in a docker container☆20Oct 8, 2025Updated 4 months ago
- iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.☆134Feb 27, 2026Updated last week
- ☆22Feb 2, 2026Updated last month
- Finding prophage regions in bacterial genomes using brute force☆22Jan 20, 2023Updated 3 years ago
- Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub☆25Mar 26, 2022Updated 3 years ago
- ☆50Mar 11, 2022Updated 3 years ago
- Intra-species bacterial contamination detection☆25Feb 5, 2026Updated last month
- A taxonomic classifier of plasmids☆28Jul 7, 2021Updated 4 years ago
- ☆29Jul 9, 2025Updated 7 months ago
- A tool for exploring large trees in the browser☆123Feb 4, 2026Updated last month
- Analysis and cuts of data from the team behind the Oxford COVID policy tracker☆34Jun 20, 2023Updated 2 years ago
- Code for paired TCR data analysis from TIRTL-seq experiments☆10Nov 24, 2025Updated 3 months ago
- ☆27Aug 2, 2023Updated 2 years ago
- Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data☆133Updated this week
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆41Feb 26, 2026Updated last week
- Ultrafast Sample Placement on Existing Trees☆139Feb 6, 2026Updated last month
- Assembly and intrahost/low-frequency variant calling for viral samples☆158Feb 23, 2026Updated last week
- Course materials for the Advanced Courses Working With Pathogen Genomes course run virtually in Asia 10-14 May 2021☆10Jul 5, 2024Updated last year
- KDS software for Kinase Drug Selectivity☆11Jun 8, 2023Updated 2 years ago
- Collection template and associated materials for SARS-CoV-2 metadata☆37Oct 27, 2023Updated 2 years ago
- This is a read-only mirror of the CRAN R package repository. TraMineR — Trajectory Miner: a Sequence Analysis Toolkit. Homepage: http:/…☆11Dec 14, 2025Updated 2 months ago
- Material for the DataLucence:Images course☆10Jun 14, 2017Updated 8 years ago
- Surveillance of pathogens using population genomics and sequencing☆58Feb 13, 2026Updated 3 weeks ago
- Datasets for https://github.com/nextstrain/nextclade☆44Feb 27, 2026Updated last week
- Global phylogenies of SARS-CoV-2 sequences☆85Oct 24, 2023Updated 2 years ago
- all methods related to Enterobase☆44Sep 4, 2024Updated last year