SARS-CoV-2 genomics
☆16Jun 20, 2025Updated last year
Alternatives and similar repositories for HCoV-19-Genomics
Users that are interested in HCoV-19-Genomics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Documentation for analyzing SARS-Cov2 samples.☆12Jun 4, 2020Updated 6 years ago
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆12Dec 2, 2024Updated last year
- VarSkip multiplex PCR designs for SARS-CoV-2 sequencing☆15Jun 14, 2022Updated 4 years ago
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated last year
- INNUENDO quality control of reads, de novo assembly and contigs quality assessment, and possible contamination search☆15Dec 14, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆42Apr 6, 2026Updated 4 months ago
- Divide and Conquer BLAST: using grid engines to accelerate NCBI-BLAST+ and other sequence analysis tools☆11Apr 26, 2020Updated 6 years ago
- Repository containing a method for automatically identifying pathogen lineages from a phylogeny.☆17May 19, 2023Updated 3 years ago
- Depth-weighted De-Mixing☆134Updated this week
- iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.☆137Updated this week
- ☆51Mar 11, 2022Updated 4 years ago
- ☆13Dec 15, 2025Updated 7 months ago
- Finding prophage regions in bacterial genomes using brute force☆22Jan 20, 2023Updated 3 years ago
- Ultra-rapid detection of viral variants directly from sequencing data☆47Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Nextstrain build for novel coronavirus SARS-CoV-2☆11Jan 11, 2021Updated 5 years ago
- MAPS with open-data visualisation☆12Dec 13, 2021Updated 4 years ago
- Mostly useful scripts and files for processing MiSeq amplicon data☆18Jul 1, 2016Updated 10 years ago
- A simple nextflow pipeline for running kraken2 and bracken in a docker container☆22Oct 8, 2025Updated 10 months ago
- Global phylogenies of SARS-CoV-2 sequences☆86Oct 24, 2023Updated 2 years ago
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆43Aug 6, 2026Updated last week
- Client-server stack for Web3! Turn your Raspberry Pi to a BAS server in minutes and enjoy the freedom of decentralized Web with a superio…☆13Jun 18, 2026Updated last month
- Analysis and cuts of data from the team behind the Oxford COVID policy tracker☆34Jun 20, 2023Updated 3 years ago
- A taxonomic classifier of plasmids☆29Jul 7, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub☆25Mar 26, 2022Updated 4 years ago
- Intra-species bacterial contamination detection☆26Jul 10, 2026Updated last month
- Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data☆137Jul 31, 2026Updated 2 weeks ago
- ☆21Apr 2, 2025Updated last year
- Quasitools is a collection of tools for analysing viral quasispecies data.☆27Nov 25, 2021Updated 4 years ago
- ☆27Aug 2, 2023Updated 3 years ago
- ☆20Apr 9, 2021Updated 5 years ago
- Assembly and intrahost/low-frequency variant calling for viral samples☆167Aug 6, 2026Updated last week
- Analysis tool for Nanopore sequencing data☆11Apr 26, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Store of the trained model for pangolin to access.☆55Oct 4, 2022Updated 3 years ago
- Bioconductor R-package: Curated Prostate Cancer Data☆11Oct 1, 2024Updated last year
- Phylogenetic model exploration with deep learning☆12Jun 15, 2026Updated last month
- Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)☆10Sep 4, 2019Updated 6 years ago
- Ultrafast Sample Placement on Existing Trees☆140Jun 1, 2026Updated 2 months ago
- Datasets for https://github.com/nextstrain/nextclade☆47Updated this week
- A Python3 script for removal of outlier sequences from a multiple sequence alignment (FASTA format).☆10Jul 6, 2026Updated last month